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Hhla1 Gene Detail
Summary
  • Symbol
    Hhla1
  • Name
    HERV-H LTR-associating 1
  • Synonyms
    F930104E18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:3615329
    NCBI Gene: 654498
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:65794292-65848653 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 29.16 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    413 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3615329
 protein coding gene Chr15:65788458-65848653 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021902
 protein coding gene Chr15:65430380-65477696 (-)
A/J MGP_AJ_G0021861
 protein coding gene Chr15:62928221-62984270 (-)
AKR/J MGP_AKRJ_G0021843
 protein coding gene Chr15:64687965-64741226 (-)
BALB/cJ MGP_BALBcJ_G0021868
 protein coding gene Chr15:63114964-63168172 (-)
C3H/HeJ MGP_C3HHeJ_G0021641
 protein coding gene Chr15:64802580-64855368 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022307
 protein coding gene Chr15:67968225-68017602 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019844
 protein coding gene Chr15:59744367-59785577 (-)
CAST/EiJ MGP_CASTEiJ_G0021160
 protein coding gene Chr15:65446639-65486236 (-)
CBA/J MGP_CBAJ_G0021607
 protein coding gene Chr15:70241814-70293962 (-)
DBA/2J MGP_DBA2J_G0021732
 protein coding gene Chr15:62725397-62776445 (-)
FVB/NJ MGP_FVBNJ_G0021714
 protein coding gene Chr15:61764996-61817872 (-)
LP/J MGP_LPJ_G0021804
 protein coding gene Chr15:65309269-65355866 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021737
 protein coding gene Chr15:75328894-75384678 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022329
 protein coding gene Chr15:65057352-65113681 (-)
PWK/PhJ MGP_PWKPhJ_G0020901
 protein coding gene Chr15:62811501-62855794 (-)
SPRET/EiJ MGP_SPRETEiJ_G0020742
 protein coding gene Chr15:64909050-64955053 (-)
WSB/EiJ MGP_WSBEiJ_G0021212
 protein coding gene Chr15:65034944-65079948 (-)



Homology
more
  • Human Ortholog
    HHLA1, HHLA1 neighbor of OC90
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    HHLA1, HHLA1 neighbor of OC90
  • Synonyms
    PLA2L
  • Links
    NCBI Gene ID: 10086
    neXtProt AC: NX_C9JL84
    UniProt: C9JL84

  • Chr Location
    8q24.22; chr8:132061480-132111159 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    29 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 654498 NCBI Gene Model | MGI Sequence Detail 54362 C57BL/6J ±  kb
transcript NM_001145096 RefSeq | MGI Sequence Detail 2262 C57BL/6  
polypeptide Q3TYV2 UniProt | EBI | MGI Sequence Detail 514 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 42
    Diseases 1
    Gene Ontology 1
    Phenotypes 29
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory