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Trim80 Gene Detail
Summary
  • Symbol
    Trim80
  • Name
    tripartite motif-containing 80
  • Synonyms
    4933422H20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:3588186
    NCBI Gene: 432613
  • Alliance
    genome feature page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:115331371-115339094 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 80.84 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    310 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3588186
 protein coding gene Chr11:115331371-115339096 (+)
129S1/SvImJ ENSMUSG00200049558
 protein coding gene Chr11:112702091-112709817 (+)
A/J ENSMUSG00195024985
 protein coding gene Chr11:112403813-112411539 (+)
AKR/J ENSMUSG00220023377
 protein coding gene Chr11:112505080-112512966 (+)
BALB/cJ ENSMUSG00180050897
 protein coding gene Chr11:112703515-112711374 (+)
C3H/HeJ ENSMUSG00175036132
 protein coding gene Chr11:112655689-112663433 (+)
C57BL/6NJ ENSMUSG00215041399
 protein coding gene Chr11:112191245-112198972 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017403
 protein coding gene Chr11:111287247-111295459 (+)
CAST/EiJ ENSTCUG00005036743
 protein coding gene Chr11:112060599-112068572 (+)
CBA/J ENSMUSG00210048926
 protein coding gene Chr11:112375700-112383433 (+)
DBA/2J ENSMUSG00185025453
 protein coding gene Chr11:112695116-112702991 (+)
FVB/NJ ENSMUSG00205036811
 protein coding gene Chr11:112494684-112502531 (+)
JF1/MsJ ENSUMUG00000020639
 protein coding gene Chr11:112963172-112971235 (+)
LP/J ENSMUSG00230050304
 protein coding gene Chr11:113749082-113756809 (+)
NOD/ShiLtJ ENSMUSG00190042022
 protein coding gene Chr11:112726604-112734330 (+)
NZO/HlLtJ ENSMUSG00225050861
 protein coding gene Chr11:115804737-115812463 (+)
PWK/PhJ ENSLUMG00010022695
 protein coding gene Chr11:112478615-112486580 (+)
SPRET/EiJ ENSMSPG00010039809
 protein coding gene Chr11:112990666-112997635 (+)
WSB/EiJ ENSIUOG00005038260
 protein coding gene Chr11:112464933-112472789 (+)



Homology
more
  • Human Ortholog
    TRIM80P, tripartite motif containing 80, pseudogene
  • Vertebrate Orthologs
    35
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRIM80P, tripartite motif containing 80, pseudogene
  • Synonyms
    TRIM47LP
  • Links
    NCBI Gene ID: 106480328

  • Chr Location
    17q25.1; chr17:75074306-75079549 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 432613 NCBI Gene Model | MGI Sequence Detail 7724 C57BL/6J ±  kb
transcript NM_001033775 RefSeq | MGI Sequence Detail 1932 C57BL/6  
polypeptide NP_001028947 RefSeq | MGI Sequence Detail 624 C57BL/6  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 4
References
more
  • Summaries
    All 24
    Gene Ontology 3
    Phenotypes 5
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/01/2026
MGI 6.24 		The Jackson Laboratory