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Gene Expression Data
Assay Details
Assay
Reference: J:91257 Gray PA, et al., Mouse Brain Organization Revealed Through Direct Genome-Scale TF Expression Analysis. Science. 2004 Dec 24;306(5705):2255-2257
Assay type: RNA in situ
MGI Accession ID: MGI:3508166
Gene symbol: Atf6b
Gene name: activating transcription factor 6 beta
Probe: MTF#1144
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 1: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: head Present Expression was detected in neural and non-neural tissue.
TS21: central nervous system Present Single cells Expression was detected in some cells.
TS21: cerebral cortex Absent
TS21: corpus striatum Absent
TS21: thalamus Absent
TS21: hypothalamus Absent
TS21: midbrain Present Single cells Expression was detected in some cells.
TS21: hindbrain Present Single cells Expression was detected in some cells.
TS21: spinal cord Present Single cells Expression was detected in some cells.
TS21: cranial ganglion Present Single cells Expression was detected in some cells.
TS21: dorsal root ganglion Present Single cells Expression was detected in some cells.
TS21: brain ventricular layer Present Single cells Expression was detected in some cells.
TS21: retina Present Uniform Expression was detected in all cells.
TS21: ear Present Single cells The tissue was inner ear and ear structures. Expression was detected in some cells.
TS21: olfactory lobe Present Single cells The tissue was olfactory epithelium and/or bulb. Expression was detected in some cells.
Specimen 2: postnatal newborn (more )
Structure Level Pattern Image Note
TS27: head Ambiguous Expression was low or absent.
TS27: central nervous system Absent
TS27: cerebral cortex Present Single cells Expression was detected in some cells.
TS27: corpus striatum Present Single cells Expression was detected in some cells.
TS27: thalamus Absent
TS27: hypothalamus Absent
TS27: midbrain Absent
TS27: cerebellum Absent
TS27: hindbrain Absent
TS27: spinal cord Present Single cells Expression was detected in some cells.
TS27: cranial ganglion Absent
TS27: dorsal root ganglion Absent
TS27: brain ventricular layer Present Single cells Expression was detected in some cells.
TS27: retina Present S5_Crebl1 Based on author communication, information in Figure S5 supersedes the supplemental table 4.
TS27: ear Absent The tissue was inner ear and ear structures.
TS27: main olfactory bulb Absent The tissue was olfactory epithelium and/or bulb.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
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