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Gene Expression Data
Assay Details
Assay
Reference: J:91257 Gray PA, et al., Mouse Brain Organization Revealed Through Direct Genome-Scale TF Expression Analysis. Science. 2004 Dec 24;306(5705):2255-2257
Assay type: RNA in situ
MGI Accession ID: MGI:3507855
Gene symbol: Smarca4
Gene name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Probe: MTF#639
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 1: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: head Present Expression was detected in neural and non-neural tissue.
TS21: central nervous system Present Uniform Expression was ubiquitous.
TS21: cerebral cortex Present Single cells Expression was detected in some cells.
TS21: corpus striatum Present Single cells Expression was detected in some cells.
TS21: thalamus Present Single cells Expression was detected in some cells.
TS21: hypothalamus Present Single cells Expression was detected in some cells.
TS21: midbrain Present Single cells Expression was detected in some cells.
TS21: hindbrain Present Single cells Expression was detected in some cells.
TS21: spinal cord Present Single cells Expression was detected in some cells.
TS21: cranial ganglion Present Single cells Expression was detected in some cells.
TS21: dorsal root ganglion Present Single cells Expression was detected in some cells.
TS21: brain ventricular layer Present
TS21: retina Present Single cells Expression was detected in some cells.
TS21: ear Present Single cells The tissue was inner ear and ear structures. Expression was detected in some cells.
TS21: olfactory lobe Present Single cells The tissue was olfactory epithelium and/or bulb. Expression was detected in some cells.
Specimen 2: postnatal newborn (more )
Structure Level Pattern Image Note
TS27: head Present Regionally restricted Expression was neural specific.
TS27: central nervous system Present Single cells Expression was detected in some cells.
TS27: cerebral cortex Absent
TS27: corpus striatum Absent
TS27: thalamus Absent
TS27: hypothalamus Absent
TS27: midbrain Absent
TS27: cerebellum Absent
TS27: hindbrain Absent
TS27: spinal cord Absent
TS27: cranial ganglion Absent
TS27: dorsal root ganglion Absent
TS27: brain ventricular layer Absent
TS27: retina Absent
TS27: ear Absent The tissue was inner ear and ear structures.
TS27: main olfactory bulb Present Single cells The tissue was olfactory epithelium and/or bulb. Expression was detected in some cells.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory