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Gene Expression Data
Assay Details
Assay
Reference: J:91257 Gray PA, et al., Mouse Brain Organization Revealed Through Direct Genome-Scale TF Expression Analysis. Science. 2004 Dec 24;306(5705):2255-2257
Assay type: RNA in situ
MGI Accession ID: MGI:3507781
Gene symbol: Bmal1
Gene name: basic helix-loop-helix ARNT like 1
Probe: MTF#538
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 1: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: head Ambiguous MTF# E 538 Image Expression was low or absent.
TS21: central nervous system Absent MTF# E 538 Image
TS21: cerebral cortex Absent MTF# E 538 Image
TS21: corpus striatum Absent MTF# E 538 Image
TS21: thalamus Absent MTF# E 538 Image
TS21: hypothalamus Absent MTF# E 538 Image
TS21: midbrain Absent MTF# E 538 Image
TS21: hindbrain Present Single cells MTF# E 538 Image Expression was detected in some cells.
TS21: spinal cord Present Single cells MTF# E 538 Image Expression was detected in some cells.
TS21: cranial ganglion Absent MTF# E 538 Image
TS21: dorsal root ganglion Absent MTF# E 538 Image
TS21: brain ventricular layer Present Single cells MTF# E 538 Image Expression was detected in some cells.
TS21: retina Absent MTF# E 538 Image
TS21: ear Absent MTF# E 538 Image The tissue was inner ear and ear structures.
TS21: olfactory lobe Absent MTF# E 538 Image The tissue was olfactory epithelium and/or bulb.
Specimen 2: postnatal newborn (more )
Structure Level Pattern Image Note
TS27: head Ambiguous MTF# P 538 Image Expression was low or absent.
TS27: central nervous system Absent MTF# P 538 Image
TS27: cerebral cortex Present Single cells MTF# P 538 Image Expression was detected in some cells.
TS27: corpus striatum Present Single cells MTF# P 538 Image Expression was detected in some cells.
TS27: thalamus Present Single cells MTF# P 538 Image Expression was detected in some cells.
TS27: hypothalamus Present Single cells MTF# P 538 Image Expression was detected in some cells.
TS27: midbrain Present Single cells MTF# P 538 Image Expression was detected in some cells.
TS27: cerebellum Present Single cells MTF# P 538 Image Expression was detected in some cells.
TS27: hindbrain Present Single cells MTF# P 538 Image Expression was detected in some cells.
TS27: spinal cord Present Single cells MTF# P 538 Image Expression was detected in some cells.
TS27: cranial ganglion Absent MTF# P 538 Image
TS27: dorsal root ganglion Absent MTF# P 538 Image
TS27: brain ventricular layer Absent MTF# P 538 Image
TS27: retina Present S5_Arntl , MTF# P 538 Image Based on author communication, information in Figure S5 supersedes the supplemental table 4.
TS27: ear Present Single cells MTF# P 538 Image The tissue was inner ear and ear structures. Expression was detected in some cells.
TS27: main olfactory bulb Absent MTF# P 538 Image The tissue was olfactory epithelium and/or bulb.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory