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Smco4 Gene Detail
Summary
  • Symbol
    Smco4
  • Name
    single-pass membrane protein with coiled-coil domains 4
  • Synonyms
    BC017612
  • Feature Type
    protein coding gene
  • IDs
    MGI:3039636
    NCBI Gene: 170748
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:15404728-15456556 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 4.95 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    185 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3039636
 protein coding gene Chr9:15379736-15456556 (+)
129S1/SvImJ MGP_129S1SvImJ_G0034366
 protein coding gene Chr9:12495750-12539416 (+)
A/J MGP_AJ_G0034344
 protein coding gene Chr9:12423317-12462984 (+)
AKR/J MGP_AKRJ_G0034272
 protein coding gene Chr9:12451496-12492390 (+)
BALB/cJ MGP_BALBcJ_G0034338
 protein coding gene Chr9:12197170-12237255 (+)
C3H/HeJ MGP_C3HHeJ_G0034049
 protein coding gene Chr9:12765965-12806001 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034860
 protein coding gene Chr9:12900306-12940022 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031798
 protein coding gene Chr9:11692032-11731626 (+)
CAST/EiJ MGP_CASTEiJ_G0033376
 protein coding gene Chr9:12615120-12655898 (+)
CBA/J MGP_CBAJ_G0034022
 protein coding gene Chr9:13511092-13553570 (+)
DBA/2J MGP_DBA2J_G0034179
 protein coding gene Chr9:12286610-12326887 (+)
FVB/NJ MGP_FVBNJ_G0034124
 protein coding gene Chr9:11873457-11913303 (+)
LP/J MGP_LPJ_G0034265
 protein coding gene Chr9:12600286-12641568 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034168
 protein coding gene Chr9:14503245-14543502 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034879
 protein coding gene Chr9:12485887-12525121 (+)
PWK/PhJ MGP_PWKPhJ_G0033082
 protein coding gene Chr9:12368215-12408310 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032917
 protein coding gene Chr9:12601183-12640912 (+)
WSB/EiJ MGP_WSBEiJ_G0033492
 protein coding gene Chr9:12322336-12364666 (+)



Homology
more
  • Human Ortholog
    SMCO4, single-pass membrane protein with coiled-coil domains 4
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SMCO4, single-pass membrane protein with coiled-coil domains 4
  • Synonyms
    C11orf75, FN5
  • Links
    NCBI Gene ID: 56935
    neXtProt AC: NX_Q9NRQ5
    UniProt: Q9NRQ5

  • Chr Location
    11q21; chr11:93478472-93553979 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    19
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000058173 Ensembl Gene Model | MGI Sequence Detail 51829 C57BL/6J ±  kb
transcript ENSMUST00000045620 Ensembl | MGI Sequence Detail 954 Not Applicable  
polypeptide ENSMUSP00000044228 Ensembl | MGI Sequence Detail 59 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000060106 single-pass membrane and coiled-coil domain-containing protein 4
    (term hierarchy)
  • InterPro Domains
    IPR027960 Protein of unknown function DUF4519
Molecular
Reagents
less
  • All nucleic 19
    cDNA 19

    Microarray probesets 3
References
more
  • Summaries
    All 28
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:76178 Kehrer-Sawatzki H, et al., Characterization of the Fugu rubripes NLK and FN5 genes flanking the NF1 (Neurofibromatosis type 1) gene in the 5' direction and mapping of the human counterparts. Gene. 2000 Jun 13;251(1):63-71
  • Latest
    J:182258 Taher L, et al., Global gene expression analysis of murine limb development. PLoS One. 2011;6(12):e28358
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory