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Garin1b Gene Detail
Summary
  • Symbol
    Garin1b
  • Name
    golgi associated RAB2 interactor 1B
  • Synonyms
    Fam71f1, LOC330277
  • Feature Type
    protein coding gene
  • IDs
    MGI:3032524
    NCBI Gene: 330277
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:29319139-29336018 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 12.36 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    827 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3032524
 protein coding gene Chr6:29313468-29336021 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030519
 protein coding gene Chr6:27106926-27123785 (+)
A/J MGP_AJ_G0030492
 protein coding gene Chr6:25960846-25977727 (+)
AKR/J MGP_AKRJ_G0030419
 protein coding gene Chr6:26816374-26834702 (+)
BALB/cJ MGP_BALBcJ_G0030502
 protein coding gene Chr6:26116164-26133042 (+)
C3H/HeJ MGP_C3HHeJ_G0030215
 protein coding gene Chr6:26813865-26832643 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030956
 protein coding gene Chr6:27891669-27908546 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028167
 protein coding gene Chr6:24168191-24186027 (+)
CAST/EiJ MGP_CASTEiJ_G0029617
 protein coding gene Chr6:26609843-26628676 (+)
CBA/J MGP_CBAJ_G0030193
 protein coding gene Chr6:28926984-28943856 (+)
DBA/2J MGP_DBA2J_G0030337
 protein coding gene Chr6:25903235-25920067 (+)
FVB/NJ MGP_FVBNJ_G0030291
 protein coding gene Chr6:25662670-25681291 (+)
LP/J MGP_LPJ_G0030424
 protein coding gene Chr6:27239850-27256886 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030327
 protein coding gene Chr6:31451223-31469142 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030986
 protein coding gene Chr6:26691817-26708696 (+)
PWK/PhJ MGP_PWKPhJ_G0029331
 protein coding gene Chr6:25438592-25455736 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029167
 protein coding gene Chr6:26413320-26430075 (+)
WSB/EiJ MGP_WSBEiJ_G0029693
 protein coding gene Chr6:26661795-26679944 (+)



Homology
more
  • Human Ortholog
    GARIN1B, golgi associated RAB2 interactor 1B
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GARIN1B, golgi associated RAB2 interactor 1B
  • Synonyms
    FAM137A, FAM71F1, GARI-L1, GARIL1, NYD-SP18
  • Links
    NCBI Gene ID: 84691
    UniProt: Q96KD3

  • Chr Location
    7q32.1; chr7:128709061-128731743 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    15 phenotypes from 2 alleles in 2 genetic backgrounds
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele exhibit male infertility due to abnormal acrosome and impaired acrosome reaction.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    15
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000039742 Ensembl Gene Model | MGI Sequence Detail 16880 C57BL/6J ±  kb
    transcript ENSMUST00000164560 Ensembl | MGI Sequence Detail 1411 Not Applicable  
    polypeptide ENSMUSP00000126496 Ensembl | MGI Sequence Detail 344 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      5 Sequences
    • Protein Ontology
      PR:000031832 Golgi-associated RAB2 interactor protein 1B
      (term hierarchy)
    • InterPro Domains
      IPR022168 Golgi associated RAB2 interactor protein-like, Rab2B-binding domain
    Molecular
    Reagents
    less
    • All nucleic 15
      cDNA 15

      Microarray probesets 2
    Other
    Accession IDs
    less
    MGI:2685610, MGI:6885581
    References
    more
    • Summaries
      All 27
      Phenotypes 8
    • Earliest
      J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    03/25/2025
    MGI 6.24     		The Jackson Laboratory