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Trav13-5 Gene Detail
Summary
  • Symbol
    Trav13-5
  • Name
    T cell receptor alpha variable 13-5
  • Synonyms
    B230359F08Rik
  • Feature Type
    gene segment
  • IDs
    MGI:3026946
    NCBI Gene: 219060
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr14:54032912-54033420 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.52 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    79 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3026946
 gene segment Chr14:54032814-54033420 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002565
 gene segment Chr14:47698262-47698868 (+)
A/J MGP_AJ_G0002536
 gene segment Chr14:46799337-46799943 (+)
AKR/J MGP_AKRJ_G0002527
 gene segment Chr14:48490846-48491452 (+)
BALB/cJ MGP_BALBcJ_G0002522
 gene segment Chr14:46778090-46778696 (+)
C3H/HeJ MGP_C3HHeJ_G0002489
 gene segment Chr14:48172721-48173327 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002663
 gene segment Chr14:50153092-50153698 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002233
 gene segment Chr14:45243530-45244122 (+)
CAST/EiJ MGP_CASTEiJ_G0002475
 gene segment Chr14:44424592-44425599 (+)
CBA/J MGP_CBAJ_G0002488
 gene segment Chr14:51606831-51607437 (+)
DBA/2J MGP_DBA2J_G0002492
 gene segment Chr14:46533557-46534163 (+)
FVB/NJ MGP_FVBNJ_G0002520
 gene segment Chr14:46017853-46018459 (+)
LP/J MGP_LPJ_G0002571
 gene segment Chr14:48732451-48733057 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002495
 gene segment Chr14:51071178-51071784 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002673
 gene segment Chr14:47679946-47681458 (+)
PWK/PhJ MGP_PWKPhJ_G0002434
 gene segment Chr14:43079289-43079884 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002386
 gene segment Chr14:43656315-43656909 (+)
WSB/EiJ MGP_WSBEiJ_G0002490
 gene segment Chr14:47990903-47992121 (+)



Homology
more
  • Human Ortholog
    TRAV22, T cell receptor alpha variable 22
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV22, T cell receptor alpha variable 22
  • Synonyms
    TCRAV13S1, TCRAV22S1
  • Links
    NCBI Gene ID: 28661
    UniProt: A0A0B4J277

  • Chr Location
    14q11.2; chr14:22070557-22071208 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
  • All Sequences
    28
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 219060 NCBI Gene Model | MGI Sequence Detail 509 C57BL/6J ±  kb
transcript AK153755 GenBank | ENA | DDBJ | MGI Sequence Detail 2614 C57BL/6J  
polypeptide A0A0B4J1K3 UniProt | EBI | MGI Sequence Detail 109 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 2
References
more
  • Summaries
    All 17
    Phenotypes 2
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory