Lrcol1 MGI Mouse Gene Detail - MGI:2686525 - leucine rich colipase-like 1

Sequence Map

Chr5:110492596-110503960 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2686525	protein coding gene	Chr5:110492373-110503960 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0029887	protein coding gene	Chr5:112792290-112803605 (+)
A/J	MGP_AJ_G0029852	protein coding gene	Chr5:108426283-108438450 (+)
AKR/J	MGP_AKRJ_G0029790	protein coding gene	Chr5:111881531-111894118 (+)
BALB/cJ	MGP_BALBcJ_G0029863	protein coding gene	Chr5:109791448-109802948 (+)
C3H/HeJ	MGP_C3HHeJ_G0029583	protein coding gene	Chr5:112300868-112313195 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0030316	protein coding gene	Chr5:117241397-117252704 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0027545	protein coding gene	Chr5:103253475-103264759 (+)
CAST/EiJ	MGP_CASTEiJ_G0028991	protein coding gene	Chr5:111167304-111179246 (+)
CBA/J	MGP_CBAJ_G0029550	protein coding gene	Chr5:121653617-121664822 (+)
DBA/2J	MGP_DBA2J_G0029700	protein coding gene	Chr5:108490497-108501870 (+)
FVB/NJ	MGP_FVBNJ_G0029657	protein coding gene	Chr5:107166235-107177367 (+)
LP/J	MGP_LPJ_G0029788	protein coding gene	Chr5:113357536-113370847 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0029688	protein coding gene	Chr5:126294811-126317529 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0030357	protein coding gene	Chr5:111311582-111322915 (+)
PWK/PhJ	MGP_PWKPhJ_G0028705	protein coding gene	Chr5:107080135-107090540 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0028543	protein coding gene	Chr5:108772404-108783655 (+)
WSB/EiJ	MGP_WSBEiJ_G0029067	protein coding gene	Chr5:111780817-111792287 (+)

Vertebrate Orthology Source

Alliance of Genome Resources

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Phenotype Summary

1 phenotype from 1 allele in 1 genetic background
9 phenotype references

Mice exhibit normal male fertility.

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Molecular Function

Biological Process

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Comparison Matrix

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			Length	Strain/Species	Flank
genomic	ENSMUSG00000072754	Ensembl Gene Model \| MGI Sequence Detail	11365	C57BL/6J	± kb
transcript	ENSMUST00000185691	Ensembl \| MGI Sequence Detail	764	Not Applicable
polypeptide	ENSMUSP00000139397	Ensembl \| MGI Sequence Detail	161	Not Applicable

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UniProt

3 Sequences
Protein Ontology

PR:000032111 leucine-rich colipase-like protein 1

(term hierarchy)
InterPro Domains

IPR001981 Colipase

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Summaries

All 24

Phenotypes 9
Earliest

J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
Latest

J:293870 Sun J, et al., CRISPR/Cas9-based genome editing in mice uncovers 13 testis- or epididymis-enriched genes individually dispensable for male reproduction. Biol Reprod. 2020 Aug 4;103(2):183-194

TSS for Lrcol1:

(View these features in JBrowse)

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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