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Ccdc121rt1 Gene Detail
Summary
  • Symbol
    Ccdc121rt1
  • Name
    coiled-coil domain containing 121, retrogene 1
  • Synonyms
    6530421E24Rik, Ccdc121, LOC329308
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685601
    NCBI Gene: 403180
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr1:181337198-181339016 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 84.69 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    41 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685601
 protein coding gene Chr1:181337198-181339016 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016886
 protein coding gene Chr1:188038068-188039886 (-)
A/J MGP_AJ_G0016865
 protein coding gene Chr1:180417747-180419677 (-)
AKR/J MGP_AKRJ_G0016831
 protein coding gene Chr1:185780037-185781855 (-)
BALB/cJ MGP_BALBcJ_G0016823
 protein coding gene Chr1:181053272-181055090 (-)
C3H/HeJ MGP_C3HHeJ_G0016648
 protein coding gene Chr1:186563322-186565140 (-)
C57BL/6NJ MGP_C57BL6NJ_G0017286
 protein coding gene Chr1:194143156-194144974 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014993
 protein coding gene Chr1:171381335-171383203 (-)
CAST/EiJ MGP_CASTEiJ_G0016229
 protein coding gene Chr1:185916494-185918742 (-)
CBA/J MGP_CBAJ_G0016622
 protein coding gene Chr1:201317694-201319513 (-)
DBA/2J MGP_DBA2J_G0016728
 protein coding gene Chr1:179229910-179231729 (-)
FVB/NJ MGP_FVBNJ_G0016724
 protein coding gene Chr1:177347269-177349087 (-)
LP/J MGP_LPJ_G0016802
 protein coding gene Chr1:189278692-189280614 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016755
 protein coding gene Chr1:208433811-208435629 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0017323
 protein coding gene Chr1:185569010-185570828 (-)
PWK/PhJ MGP_PWKPhJ_G0016017
 protein coding gene Chr1:178367084-178369013 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015793
 protein coding gene Chr1:184525546-184527362 (-)
WSB/EiJ MGP_WSBEiJ_G0016292
 protein coding gene Chr1:185768749-185770567 (-)



Homology
more
  • Human Ortholog
    CCDC121, coiled-coil domain containing 121
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCDC121, coiled-coil domain containing 121
  • Links
    NCBI Gene ID: 79635
    neXtProt AC: NX_Q6ZUS5
    UniProt: Q6ZUS5

  • Chr Location
    2p23.3; chr2:27625638-27629012 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 403180 NCBI Gene Model | MGI Sequence Detail 1819 C57BL/6J ±  kb
transcript NM_207280 RefSeq | MGI Sequence Detail 1835 C57BL/6  
polypeptide NP_997163 RefSeq | MGI Sequence Detail 323 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR032777 Domain of unknown function DUF4515
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 1
References
more
  • Summaries
    All 14
    Phenotypes 2
  • Earliest
    J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
  • Latest
    J:155721 Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI), Consensus CDS project. Database Download. 2010;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory