A430093F15Rik MGI Mouse Gene Detail - MGI:2685520

Symbol

A430093F15Rik
Name

RIKEN cDNA A430093F15 gene
Synonyms

LOC269062

Feature Type

lncRNA gene
IDs

MGI:2685520
NCBI Gene: 403202
Alliance

gene page
Transcription Start Sites

10 TSS

Sequence Map

Chr19:10718311-10763407 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 19, 7.16 cM
Mapping Data

1 experiment

SNPs within 2kb

359 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2685520	lncRNA gene	Chr19:10718311-10763407 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015382	unclassified non-coding RNA gene	Chr19:8100201-8157489 (+)
A/J	MGP_AJ_G0015356	unclassified non-coding RNA gene	Chr19:7556902-7603743 (+)
AKR/J	MGP_AKRJ_G0015320	unclassified non-coding RNA gene	Chr19:7850227-7898820 (+)
BALB/cJ	MGP_BALBcJ_G0015320	unclassified non-coding RNA gene	Chr19:7598095-7646305 (+)
C3H/HeJ	MGP_C3HHeJ_G0015144	unclassified non-coding RNA gene	Chr19:7748463-7788776 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015774	unclassified non-coding RNA gene	Chr19:8460101-8509478 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013515	unclassified non-coding RNA gene	Chr19:7976411-8020938 (+)
CAST/EiJ	MGP_CASTEiJ_G0014695	unclassified non-coding RNA gene	Chr19:7386127-7433716 (+)
CBA/J	MGP_CBAJ_G0015123	unclassified non-coding RNA gene	Chr19:8501855-8555555 (+)
DBA/2J	MGP_DBA2J_G0015218	unclassified non-coding RNA gene	Chr19:7561915-7607919 (+)
FVB/NJ	MGP_FVBNJ_G0015225	unclassified non-coding RNA gene	Chr19:7606758-7651865 (+)
LP/J	MGP_LPJ_G0015298	unclassified non-coding RNA gene	Chr19:8060375-8109511 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015251	unclassified non-coding RNA gene	Chr19:8407106-8458878 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015813	unclassified non-coding RNA gene	Chr19:7865039-7918493 (+)
PWK/PhJ	MGP_PWKPhJ_G0014485	unclassified non-coding RNA gene	Chr19:7008024-7059645 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014272	unclassified non-coding RNA gene	Chr19:7046605-7098224 (+)
WSB/EiJ	MGP_WSBEiJ_G0014802	unclassified non-coding RNA gene	Chr19:7763471-7812307 (+)

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Gene Tree

A430093F15Rik

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Phenotype Summary

1 phenotype reference

All Mutations and Alleles

1
Gene trapped

1
Incidental Mutations

APF
Find Mice (IMSR)

2 strains or lines available

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

6

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

36
RefSeq

2
UniProt

1

Ensembl

ENSMUSG00000067577 (Evidence)
NCBI Gene

403202

			Length	Strain/Species	Flank
genomic	403202	NCBI Gene Model \| MGI Sequence Detail	45097	C57BL/6J	± kb
transcript	NR_027805	RefSeq \| MGI Sequence Detail	2115	C57BL/6
polypeptide	Q8C505	UniProt \| EBI \| MGI Sequence Detail	100	Not Applicable

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UniProt

1 Sequence

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All nucleic 6

cDNA 6

Microarray probesets 3

Summaries

All 15

Phenotypes 1
Earliest

J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for A430093F15Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155101	Chr19:10716481-10716490 (+)	-1,825 bp
Tssr155102	Chr19:10718299-10718313 (+)	-5 bp
Tssr155103	Chr19:10719255-10719261 (+)	947 bp
Tssr155104	Chr19:10725347-10725363 (+)	7,044 bp
Tssr155105	Chr19:10737162-10737204 (+)	18,872 bp
Tssr155106	Chr19:10759210-10759244 (+)	40,916 bp
Tssr155107	Chr19:10760887-10760897 (+)	42,581 bp
Tssr155108	Chr19:10761587-10761596 (+)	43,281 bp
Tssr155109	Chr19:10761776-10761814 (+)	43,484 bp
Tssr155110	Chr19:10761945-10761963 (+)	43,643 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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