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Podnl1 Gene Detail
Summary
  • Symbol
    Podnl1
  • Name
    podocan-like 1
  • Synonyms
    5832418A03Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2685352
    NCBI Gene: 244550
  • Alliance
    genome feature page
  • Transcription Start Sites
    10 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:84852618-84859156 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 40.31 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    192 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2685352
 protein coding gene Chr8:84852552-84869620 (+)
129S1/SvImJ ENSMUSG00200024945
 protein coding gene Chr8:79223880-79230383 (+)
A/J ENSMUSG00195016785
 protein coding gene Chr8:79581289-79587792 (+)
AKR/J ENSMUSG00220022637
 protein coding gene Chr8:79623297-79629800 (+)
BALB/cJ ENSMUSG00180017652
 protein coding gene Chr8:79422422-79428925 (+)
C3H/HeJ ENSMUSG00175010455
 protein coding gene Chr8:79511713-79518215 (+)
C57BL/6NJ ENSMUSG00215017006
 protein coding gene Chr8:79147639-79154179 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031293
 protein coding gene Chr8:75466327-75472842 (+)
CAST/EiJ ENSTCUG00005032579
 protein coding gene Chr8:79032358-79038844 (+)
CBA/J ENSMUSG00210020202
 protein coding gene Chr8:79504147-79510649 (+)
DBA/2J ENSMUSG00185034276
 protein coding gene Chr8:85612758-85619260 (+)
FVB/NJ ENSMUSG00205035257
 protein coding gene Chr8:78558894-78565431 (+)
JF1/MsJ ENSUMUG00000008734
 protein coding gene Chr8:87913722-87920255 (+)
LP/J ENSMUSG00230026567
 protein coding gene Chr8:89220802-89227369 (+)
NOD/ShiLtJ ENSMUSG00190024246
 protein coding gene Chr8:79577589-79584093 (+)
NZO/HlLtJ ENSMUSG00225039364
 protein coding gene Chr8:92608620-92615156 (+)
PWK/PhJ ENSLUMG00010026714
 protein coding gene Chr8:79259047-79265566 (+)
SPRET/EiJ ENSMSPG00010026496
 protein coding gene Chr8:81171858-81178358 (+)
WSB/EiJ ENSIUOG00005014897
 protein coding gene Chr8:80317366-80323870 (+)



Homology
more
  • Human Ortholog
    PODNL1, podocan like 1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PODNL1, podocan like 1
  • Synonyms
    SLRR5B
  • Links
    NCBI Gene ID: 79883
    UniProt: Q6PEZ8

  • Chr Location
    19p13.12; chr19:13931183-13953392 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    37 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    5
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000012889 Ensembl Gene Model | MGI Sequence Detail 6539 C57BL/6J ±  kb
transcript ENSMUST00000093380 Ensembl | MGI Sequence Detail 2090 Not Applicable  
polypeptide ENSMUSP00000091073 Ensembl | MGI Sequence Detail 559 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 1
References
more
  • Summaries
    All 55
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 37
  • Earliest
    J:13049 Gruneberg H, Genetical studies on the skeleton of the mouse. XVIII. Three genes for syndactylism. J Genet. 1956;54(1):113-145
  • Latest
    J:348117 Okuma H, et al., N-terminal domain on dystroglycan enables LARGE1 to extend matriglycan on alpha-dystroglycan and prevents muscular dystrophy. Elife. 2023 Feb 1;12
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory