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Galnt9 Gene Detail
Summary
  • Symbol
    Galnt9
  • Name
    polypeptide N-acetylgalactosaminyltransferase 9
  • Synonyms
    GalNAc-T9
  • Feature Type
    protein coding gene
  • IDs
    MGI:2677965
    NCBI Gene: 231605
  • Alliance
    genome feature page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:110692221-110769246 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 53.66 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    2206 from dbSNP Build 142
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2677965
 protein coding gene Chr5:110692217-110769246 (+)
129S1/SvImJ ENSMUSG00200022011
 protein coding gene Chr5:104518634-104536544 (+)
A/J ENSMUSG00195029887
 protein coding gene Chr5:104001106-104019001 (+)
AKR/J ENSMUSG00220042494
 protein coding gene Chr5:103521292-103539127 (+)
BALB/cJ ENSMUSG00180038596
 protein coding gene Chr5:104152857-104170752 (+)
C3H/HeJ ENSMUSG00175035322
 protein coding gene Chr5:106138818-106156713 (+)
C57BL/6NJ ENSMUSG00215016485
 protein coding gene Chr5:104148893-104166754 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027547
 protein coding gene Chr5:103457340-103540807 (+)
CAST/EiJ no annotation
CBA/J ENSMUSG00210040397
 protein coding gene Chr5:104890956-104908851 (+)
DBA/2J ENSMUSG00185043322
 protein coding gene Chr5:107917989-107935890 (+)
FVB/NJ ENSMUSG00205024286
 protein coding gene Chr5:103790533-103808426 (+)
JF1/MsJ no annotation
LP/J ENSMUSG00230047598
 protein coding gene Chr5:112057102-112075010 (+)
NOD/ShiLtJ ENSMUSG00190043084
 protein coding gene Chr5:103826725-103844620 (+)
NZO/HlLtJ ENSMUSG00225024608
 protein coding gene Chr5:119678960-119696870 (+)
PWK/PhJ no annotation
SPRET/EiJ ENSMSPG00010043607
 protein coding gene Chr5:105864816-105941425 (+)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    GALNT9, polypeptide N-acetylgalactosaminyltransferase 9
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GALNT9, polypeptide N-acetylgalactosaminyltransferase 9
  • Synonyms
    GALNAC-T9, GALNACT9
  • Links
    NCBI Gene ID: 50614
    UniProt: Q9HCQ5

  • Chr Location
    12q24.33; chr12:132196372-132329598 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    12 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    835
  • Tissues
    119
  • cDNA Data
    10
  • Literature Summary
    5
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000033316 Ensembl Gene Model | MGI Sequence Detail 77026 C57BL/6J ±  kb
    transcript ENSMUST00000040001 Ensembl | MGI Sequence Detail 2883 Not Applicable  
    polypeptide ENSMUSP00000038633 Ensembl | MGI Sequence Detail 604 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 13
      cDNA 10
      Primer pair 2
      Other 1

      Microarray probesets 3
    References
    more
    • Summaries
      All 40
      Developmental Gene Expression 5
      Gene Ontology 4
      Phenotypes 12
    • Earliest
      J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
    • Latest
      J:367686 Briere A, et al., Systematic Ocular Phenotyping of Knockout Mouse Lines Identifies Genes Associated With Age-Related Corneal Dystrophies. Invest Ophthalmol Vis Sci. 2025 May 1;66(5):7
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/01/2026
    MGI 6.24     		The Jackson Laboratory