D130020L05Rik MGI Mouse Gene Detail - MGI:2450270

Sequence Map

Chr12:101048710-101055186 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2450270	lncRNA gene	Chr12:101048710-101055186 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005390	lincRNA gene	Chr12:102587420-102596379 (+)
A/J	MGP_AJ_G0005373	lincRNA gene	Chr12:98715393-98721834 (+)
AKR/J	MGP_AKRJ_G0005353	lincRNA gene	Chr12:101411634-101417876 (+)
BALB/cJ	MGP_BALBcJ_G0005355	lincRNA gene	Chr12:99075253-99081490 (+)
C3H/HeJ	MGP_C3HHeJ_G0005304	lincRNA gene	Chr12:101944269-101951381 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005509	lincRNA gene	Chr12:105747920-105756424 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004894	lincRNA gene	Chr12:95702879-95709190 (+)
CAST/EiJ	MGP_CASTEiJ_G0005248	lincRNA gene	Chr12:97073243-97079528 (+)
CBA/J	MGP_CBAJ_G0005293	lincRNA gene	Chr12:109671654-109677897 (+)
DBA/2J	MGP_DBA2J_G0005310	lincRNA gene	Chr12:98169693-98175932 (+)
FVB/NJ	MGP_FVBNJ_G0005336	lincRNA gene	Chr12:96890200-96896438 (+)
LP/J	MGP_LPJ_G0005392	lincRNA gene	Chr12:102432606-102438844 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005318	lincRNA gene	Chr12:113238739-113244988 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005510	lincRNA gene	Chr12:100987728-100993967 (+)
PWK/PhJ	MGP_PWKPhJ_G0005197	lincRNA gene	Chr12:92814399-92820908 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005118	lincRNA gene	Chr12:95171322-95181174 (+)
WSB/EiJ	MGP_WSBEiJ_G0005298	lincRNA gene	Chr12:101853564-101862019 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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			Length	Strain/Species	Flank
genomic	319760	NCBI Gene Model \| MGI Sequence Detail	6477	C57BL/6J	± kb
transcript	NR_038050	RefSeq \| MGI Sequence Detail	2935	C57BL/6
polypeptide	Q8C2V0	UniProt \| EBI \| MGI Sequence Detail	178	Not Applicable

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MGI:2442679

Summaries

All 18

Phenotypes 7
Earliest

J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Latest

J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for D130020L05Rik:

(View these features in JBrowse)

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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