About   Help   FAQ
Sec22c Gene Detail
Summary
  • Symbol
    Sec22c
  • Name
    SEC22 homolog C, vesicle trafficking protein
  • Synonyms
    5930407I15Rik, Sec22l3
  • Feature Type
    protein coding gene
  • IDs
    MGI:2447871
    NCBI Gene: 215474
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:121509111-121534556 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 72.54 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    248 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2447871
 protein coding gene Chr9:121509111-121534614 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035445
 protein coding gene Chr9:124629374-124656533 (-)
A/J MGP_AJ_G0035426
 protein coding gene Chr9:119885847-119911616 (-)
AKR/J MGP_AKRJ_G0035359
 protein coding gene Chr9:123081016-123106249 (-)
BALB/cJ MGP_BALBcJ_G0035422
 protein coding gene Chr9:119793869-119819647 (-)
C3H/HeJ MGP_C3HHeJ_G0035129
 protein coding gene Chr9:123537490-123564206 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035945
 protein coding gene Chr9:128043632-128070712 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032827
 protein coding gene Chr9:117047774-117074131 (-)
CAST/EiJ MGP_CASTEiJ_G0034434
 protein coding gene Chr9:123575768-123601168 (-)
CBA/J MGP_CBAJ_G0035097
 protein coding gene Chr9:132728855-132761570 (-)
DBA/2J MGP_DBA2J_G0035256
 protein coding gene Chr9:119326474-119351909 (-)
FVB/NJ MGP_FVBNJ_G0035203
 protein coding gene Chr9:118247018-118272131 (-)
LP/J MGP_LPJ_G0035335
 protein coding gene Chr9:124968342-125002562 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035244
 protein coding gene Chr9:133671607-133698766 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035964
 protein coding gene Chr9:123521015-123547681 (-)
PWK/PhJ MGP_PWKPhJ_G0034138
 protein coding gene Chr9:119789649-119814192 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033975
 protein coding gene Chr9:123636135-123660023 (-)
WSB/EiJ MGP_WSBEiJ_G0034554
 protein coding gene Chr9:123372091-123398532 (-)



Homology
more
  • Human Ortholog
    SEC22C, SEC22 homolog C, vesicle trafficking protein
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SEC22C, SEC22 homolog C, vesicle trafficking protein
  • Synonyms
    SEC22L3
  • Links
    NCBI Gene ID: 9117
    neXtProt AC: NX_Q9BRL7
    UniProt: Q9BRL7

  • Chr Location
    3p22.1; chr3:42547969-42601080 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    45
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000061536 Ensembl Gene Model | MGI Sequence Detail 25446 C57BL/6J ±  kb
transcript ENSMUST00000078547 Ensembl | MGI Sequence Detail 5713 Not Applicable  
polypeptide ENSMUSP00000077628 Ensembl | MGI Sequence Detail 303 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 45
    cDNA 45

    Microarray probesets 4
Other
Accession IDs
less
MGI:2444875
References
more
  • Summaries
    All 24
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 2
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:245876 Rohacek AM, et al., ESRP1 Mutations Cause Hearing Loss due to Defects in Alternative Splicing that Disrupt Cochlear Development. Dev Cell. 2017 Nov 06;43(3):318-331.e5
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory