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Rfx6 Gene Detail
Summary
  • Symbol
    Rfx6
  • Name
    regulatory factor X, 6
  • Synonyms
    4930572O07Rik, Rfxdc1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2445208
    NCBI Gene: 320995
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:51553856-51606525 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 25.74 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    420 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2445208
 protein coding gene Chr10:51553852-51606528 (+)
129S1/SvImJ MGP_129S1SvImJ_G0017218
 protein coding gene Chr10:50820269-50879187 (+)
A/J MGP_AJ_G0017194
 protein coding gene Chr10:49321998-49374455 (+)
AKR/J MGP_AKRJ_G0017153
 protein coding gene Chr10:50230503-50285978 (+)
BALB/cJ MGP_BALBcJ_G0017155
 protein coding gene Chr10:49421772-49474707 (+)
C3H/HeJ MGP_C3HHeJ_G0016977
 protein coding gene Chr10:50514489-50568550 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017614
 protein coding gene Chr10:52422426-52476326 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0015308
 protein coding gene Chr10:46628032-46680846 (+)
CAST/EiJ MGP_CASTEiJ_G0016551
 protein coding gene Chr10:50664186-50723704 (+)
CBA/J MGP_CBAJ_G0016950
 protein coding gene Chr10:54681477-54746326 (+)
DBA/2J MGP_DBA2J_G0017055
 protein coding gene Chr10:48750644-48803368 (+)
FVB/NJ MGP_FVBNJ_G0017049
 protein coding gene Chr10:48097601-48150167 (+)
LP/J MGP_LPJ_G0017130
 protein coding gene Chr10:50855682-50924988 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017078
 protein coding gene Chr10:56599725-56659753 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017649
 protein coding gene Chr10:50181430-50236169 (+)
PWK/PhJ MGP_PWKPhJ_G0016332
 protein coding gene Chr10:48625446-48679558 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016117
 protein coding gene Chr10:49807049-49866621 (+)
WSB/EiJ MGP_WSBEiJ_G0016616
 protein coding gene Chr10:50401061-50459912 (+)



Homology
more
  • Human Ortholog
    RFX6, regulatory factor X6
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RFX6, regulatory factor X6
  • Synonyms
    dJ955L16.1, MTCHRS, MTFS, RFXDC1
  • Links
    NCBI Gene ID: 222546
    neXtProt AC: NX_Q8HWS3
    UniProt: Q8HWS3

  • Chr Location
    6q22.1; chr6:116877212-116932161 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotypes from 2 alleles in 2 genetic backgrounds
    20 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygotes fail to feed normally, show small bowel obstruction and die within 2 days of birth. Mutants fail to generate any of the normal islet cell types except for pancreatic-polypeptide-producing cells. Some display a reduced pancreas size; however, primary cilia formation in islets is normal.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    26
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    758
  • Tissues
    30
  • cDNA Data
    7
  • Literature Summary
    11
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 320995 NCBI Gene Model | MGI Sequence Detail 52670 C57BL/6J ±  kb
    transcript NM_001159389 RefSeq | MGI Sequence Detail 3457 C57BL/6  
    polypeptide Q8C7R7 UniProt | EBI | MGI Sequence Detail 927 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 12
      Genomic 2
      cDNA 7
      Primer pair 2
      Other 1

      Microarray probesets 1
    References
    more
    • Summaries
      All 49
      Developmental Gene Expression 11
      Gene Ontology 5
      Phenotypes 20
    • Earliest
      J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
    • Latest
      J:336753 Zinina VV, et al., TCF7L1 Controls the Differentiation of Tuft Cells in Mouse Small Intestine. Cells. 2023 May 23;12(11)
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/09/2024
    MGI 6.23     		The Jackson Laboratory