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A630052C17Rik Gene Detail
Summary
  • Symbol
    A630052C17Rik
  • Name
    RIKEN cDNA A630052C17 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2444673
    NCBI Gene: 320757
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:29120909-29123558 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 16.46 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    47 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444673
 lncRNA gene Chr11:29120909-29123558 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015162
 unclassified non-coding RNA gene Chr11:27163631-27166280 (-)
A/J MGP_AJ_G0015136
 unclassified non-coding RNA gene Chr11:26175002-26177696 (-)
AKR/J MGP_AKRJ_G0015099
 unclassified non-coding RNA gene Chr11:27023418-27026035 (-)
BALB/cJ MGP_BALBcJ_G0015099
 unclassified non-coding RNA gene Chr11:26363376-26365993 (-)
C3H/HeJ MGP_C3HHeJ_G0014922
 unclassified non-coding RNA gene Chr11:26933776-26936470 (-)
C57BL/6NJ MGP_C57BL6NJ_G0015555
 unclassified non-coding RNA gene Chr11:28134716-28137365 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013301
 unclassified non-coding RNA gene Chr11:24821078-24823692 (-)
CAST/EiJ MGP_CASTEiJ_G0014476
 unclassified non-coding RNA gene Chr11:26973145-26975839 (-)
CBA/J MGP_CBAJ_G0014901
 unclassified non-coding RNA gene Chr11:29425269-29427918 (-)
DBA/2J MGP_DBA2J_G0014994
 unclassified non-coding RNA gene Chr11:26027994-26030688 (-)
FVB/NJ MGP_FVBNJ_G0015006
 unclassified non-coding RNA gene Chr11:25831750-25834400 (-)
LP/J MGP_LPJ_G0015076
 unclassified non-coding RNA gene Chr11:27416962-27419612 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015032
 unclassified non-coding RNA gene Chr11:30489708-30492358 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0015594
 unclassified non-coding RNA gene Chr11:27129396-27132090 (-)
PWK/PhJ MGP_PWKPhJ_G0014268
 unclassified non-coding RNA gene Chr11:26121507-26124201 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014055
 unclassified non-coding RNA gene Chr11:26808554-26811175 (-)
WSB/EiJ MGP_WSBEiJ_G0014579
 unclassified non-coding RNA gene Chr11:26818624-26821274 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Gene trapped
    1
  • Genomic Mutations
    1 involving A630052C17Rik
  • Find Mice (IMSR)
    1 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    710
  • Tissues
    3
  • cDNA Data
    12
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    30
  • RefSeq
    2
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000086725 Ensembl Gene Model | MGI Sequence Detail 2650 C57BL/6J ±  kb
transcript ENSMUST00000129876 Ensembl | MGI Sequence Detail 2203 Not Applicable  
polypeptide Q8C9J1 UniProt | EBI | MGI Sequence Detail 109 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 3
References
more
  • Summaries
    All 17
    Developmental Gene Expression 1
    Phenotypes 4
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory