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Thumpd1 Gene Detail
Summary
  • Symbol
    Thumpd1
  • Name
    THUMP domain containing 1
  • Synonyms
    6330575P11Rik, MGC:7161
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444479
    NCBI Gene: 233802
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:119314316-119320021 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 64.13 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    38 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444479
 protein coding gene Chr7:119314316-119322842 (-)
129S1/SvImJ MGP_129S1SvImJ_G0032916
 protein coding gene Chr7:123640902-123646567 (-)
A/J MGP_AJ_G0032899
 protein coding gene Chr7:120444976-120450307 (-)
AKR/J MGP_AKRJ_G0032831
 protein coding gene Chr7:123548124-123553793 (-)
BALB/cJ MGP_BALBcJ_G0032904
 protein coding gene Chr7:120171198-120176529 (-)
C3H/HeJ MGP_C3HHeJ_G0032614
 protein coding gene Chr7:123445793-123451124 (-)
C57BL/6NJ MGP_C57BL6NJ_G0033410
 protein coding gene Chr7:128530262-128535931 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0030382
 protein coding gene Chr7:121887676-121893450 (-)
CAST/EiJ MGP_CASTEiJ_G0031942
 protein coding gene Chr7:115213411-115219971 (-)
CBA/J MGP_CBAJ_G0032587
 protein coding gene Chr7:132825954-132831294 (-)
DBA/2J MGP_DBA2J_G0032739
 protein coding gene Chr7:118484892-118490223 (-)
FVB/NJ MGP_FVBNJ_G0032692
 protein coding gene Chr7:118331471-118337140 (-)
LP/J MGP_LPJ_G0032833
 protein coding gene Chr7:125098667-125104384 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0032724
 protein coding gene Chr7:134289293-134295482 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0033430
 protein coding gene Chr7:122518947-122524278 (-)
PWK/PhJ MGP_PWKPhJ_G0031650
 protein coding gene Chr7:111408212-111413539 (-)
SPRET/EiJ MGP_SPRETEiJ_G0016238
 protein coding gene Chr10:69646076-69652090 (-)
WSB/EiJ MGP_WSBEiJ_G0032055
 protein coding gene Chr7:123431012-123436681 (-)



Homology
more
  • Human Ortholog
    THUMPD1, THUMP domain containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    THUMPD1, THUMP domain containing 1
  • Synonyms
    NEDSOA, Tan1
  • Links
    NCBI Gene ID: 55623
    neXtProt AC: NX_Q9NXG2
    UniProt: Q9NXG2

  • Chr Location
    16p12.3; chr16:20702816-20742084 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    708
  • Tissues
    2
  • cDNA Data
    138
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000030942 Ensembl Gene Model | MGI Sequence Detail 5706 C57BL/6J ±  kb
transcript ENSMUST00000033236 Ensembl | MGI Sequence Detail 2689 Not Applicable  
polypeptide ENSMUSP00000033236 Ensembl | MGI Sequence Detail 350 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 139
    cDNA 138
    Primer pair 1

    Microarray probesets 2
References
more
  • Summaries
    All 29
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 5
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory