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6030445D17Rik Gene Detail
Summary
  • Symbol
    6030445D17Rik
  • Name
    RIKEN cDNA 6030445D17 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2443447
    NCBI Gene: 320133
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:136189561-136191288 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 68.80 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    43 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443447
 lncRNA gene Chr4:136189561-136191288 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028967
 protein coding gene Chr4:139035271-139036984 (+)
A/J MGP_AJ_G0028926
 protein coding gene Chr4:133099455-133101152 (+)
AKR/J MGP_AKRJ_G0028878
 protein coding gene Chr4:136944543-136946244 (+)
BALB/cJ MGP_BALBcJ_G0028950
 protein coding gene Chr4:133760637-133762352 (+)
C3H/HeJ MGP_C3HHeJ_G0028664
 protein coding gene Chr4:137235617-137237318 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029391
 protein coding gene Chr4:144000780-144002507 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026662
 protein coding gene Chr4:126134163-126135849 (+)
CAST/EiJ MGP_CASTEiJ_G0028096
 protein coding gene Chr4:135381631-135383342 (+)
CBA/J MGP_CBAJ_G0028629
 protein coding gene Chr4:147942332-147944033 (+)
DBA/2J MGP_DBA2J_G0028778
 protein coding gene Chr4:133514188-133515903 (+)
FVB/NJ MGP_FVBNJ_G0028745
 protein coding gene Chr4:132464837-132466552 (+)
LP/J MGP_LPJ_G0028877
 protein coding gene Chr4:139119111-139120838 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028771
 protein coding gene Chr4:152120311-152122026 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029429
 protein coding gene Chr4:137426748-137428475 (+)
PWK/PhJ MGP_PWKPhJ_G0027816
 protein coding gene Chr4:130298201-130299898 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027642
 protein coding gene Chr4:133217484-133219177 (+)
WSB/EiJ MGP_WSBEiJ_G0028174
 protein coding gene Chr4:137581652-137583353 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    5
Sequences &
Gene Models
less
  • All Sequences
    25
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000066178 Ensembl Gene Model | MGI Sequence Detail 1728 C57BL/6J ±  kb
transcript ENSMUST00000084593 Ensembl | MGI Sequence Detail 1728 Not Applicable  
polypeptide Q8CCB8 UniProt | EBI | MGI Sequence Detail 160 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 2
References
more
  • Summaries
    All 16
    Phenotypes 4
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory