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A330041J22Rik Gene Detail
Summary
  • Symbol
    A330041J22Rik
  • Name
    RIKEN cDNA A330041J22 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2442269
    NCBI Gene: 319556
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr9:86577513-86583306 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 46.58 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    67 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2442269
 lncRNA gene Chr9:86577495-86583306 (+)
129S1/SvImJ MGP_129S1SvImJ_G0004657
 antisense lncRNA gene Chr9:87541489-87547272 (+)
A/J MGP_AJ_G0004638
 antisense lncRNA gene Chr9:84483590-84489372 (+)
AKR/J MGP_AKRJ_G0004621
 antisense lncRNA gene Chr9:86492764-86498531 (+)
BALB/cJ MGP_BALBcJ_G0004622
 antisense lncRNA gene Chr9:84126761-84132543 (+)
C3H/HeJ MGP_C3HHeJ_G0004571
 antisense lncRNA gene Chr9:86952278-86958060 (+)
C57BL/6NJ MGP_C57BL6NJ_G0004772
 antisense lncRNA gene Chr9:89903692-89909480 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0004527
 antisense lncRNA gene Chr9:87417819-87423566 (+)
CBA/J MGP_CBAJ_G0004565
 antisense lncRNA gene Chr9:93069829-93075622 (+)
DBA/2J MGP_DBA2J_G0004580
 antisense lncRNA gene Chr9:84042247-84048003 (+)
FVB/NJ MGP_FVBNJ_G0004598
 antisense lncRNA gene Chr9:83126625-83132872 (+)
LP/J MGP_LPJ_G0004661
 antisense lncRNA gene Chr9:87752800-87758585 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0004586
 antisense lncRNA gene Chr9:94682108-94687875 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0004771
 antisense lncRNA gene Chr9:86597580-86603340 (+)
PWK/PhJ MGP_PWKPhJ_G0004481
 antisense lncRNA gene Chr9:84209187-84214972 (+)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0004570
 antisense lncRNA gene Chr9:86633831-86639603 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    4
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000087466 Ensembl Gene Model | MGI Sequence Detail 5794 C57BL/6J ±  kb
transcript ENSMUST00000150367 Ensembl | MGI Sequence Detail 1825 Not Applicable  
polypeptide Q8CA76 UniProt | EBI | MGI Sequence Detail 107 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 1
References
more
  • Summaries
    All 13
    Phenotypes 3
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory