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Mir124a-1hg Gene Detail
Summary
  • Symbol
    Mir124a-1hg
  • Name
    Mir124-1 host gene (non-protein coding)
  • Synonyms
    A930011O12Rik, Rncr3
Location &
Maps
more
  • Sequence Map
    Chr14:64825564-64831410 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 33.77 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    134 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2442197
 lncRNA gene Chr14:64824613-64835573 (+)
129S1/SvImJ ENSMUSG00200030528
 lncRNA gene Chr14:53436051-53442729 (+)
A/J ENSMUSG00195015008
 lncRNA gene Chr14:53610591-53617272 (+)
AKR/J ENSMUSG00220032783
 lncRNA gene Chr14:52951101-52957783 (+)
BALB/cJ ENSMUSG00180037511
 lncRNA gene Chr14:53226718-53233397 (+)
C3H/HeJ ENSMUSG00175039524
 lncRNA gene Chr14:54972392-54979071 (+)
C57BL/6NJ ENSMUSG00215027266
 lncRNA gene Chr14:53157447-53164119 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005053
 lincRNA gene Chr14:55737201-55743860 (+)
CAST/EiJ ENSTCUG00005039413
 lncRNA gene Chr14:54872439-54879114 (+)
CBA/J ENSMUSG00210039911
 lncRNA gene Chr14:53598025-53604706 (+)
DBA/2J ENSMUSG00185033316
 lncRNA gene Chr14:58770258-58776936 (+)
FVB/NJ ENSMUSG00205040160
 lncRNA gene Chr14:53113431-53120112 (+)
JF1/MsJ ENSUMUG00000047968
 lncRNA gene Chr14:69942725-69949415 (+)
LP/J ENSMUSG00230037783
 lncRNA gene Chr14:70799628-70806305 (+)
NOD/ShiLtJ ENSMUSG00190044134
 lncRNA gene Chr14:53392748-53399427 (+)
NZO/HlLtJ ENSMUSG00225046738
 lncRNA gene Chr14:61125729-61132408 (+)
PWK/PhJ ENSLUMG00010040067
 lncRNA gene Chr14:52831115-52837812 (+)
SPRET/EiJ ENSMSPG00010033378
 lncRNA gene Chr14:56307366-56314050 (+)
WSB/EiJ ENSIUOG00005039977
 lncRNA gene Chr14:52830367-52837043 (+)



Homology
more
  • Human Ortholog
    MIR124-1HG, MIR124-1 host gene
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    MIR124-1HG, MIR124-1 host gene
  • Synonyms
    LINC00599, neuroLNC, Rncr3
  • Links
    NCBI Gene ID: 157627

  • Chr Location
    8p23.1; chr8:9899744-9919233 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotypes from 1 allele in 2 genetic backgrounds
    7 phenotypes from multigenic genotypes
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a targeted mutation exhibit impaired hippocampal axogenesis and retinal cone cell survival.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    611
  • Tissues
    12
  • cDNA Data
    99
  • Literature Summary
    6
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    • All Sequences
      43
    • RefSeq
      1
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 268755 NCBI Gene Model | MGI Sequence Detail 5847 C57BL/6J ±  kb
    transcript NR_040709 RefSeq | MGI Sequence Detail 4054 C57BL/6  
    For the selected sequence
    Molecular
    Reagents
    less
    • All nucleic 99
      cDNA 99

      Microarray probesets 3
    References
    more
    • Summaries
      All 34
      Developmental Gene Expression 6
      Phenotypes 8
    • Earliest
      J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
    • Latest
      J:349888 Zhang J, et al., m(5)C methylated lncRncr3-MeCP2 interaction restricts miR124a-initiated neurogenesis. Nat Commun. 2024 Jun 15;15(1):5136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/08/2026
    MGI 6.24     		The Jackson Laboratory