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Rab42 Gene Detail
Summary
  • Symbol
    Rab42
  • Name
    RAB42, member RAS oncogene family
  • Synonyms
    9530096D07Rik, Rab42-ps
  • Feature Type
    protein coding gene
  • IDs
    MGI:2441753
    NCBI Gene: 242681
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:132029508-132030696 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 65.14 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    64 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2441753
 protein coding gene Chr4:132027749-132030696 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028867
 protein coding gene Chr4:134442242-134443432 (-)
A/J MGP_AJ_G0028826
 protein coding gene Chr4:128857064-128858252 (-)
AKR/J MGP_AKRJ_G0028779
 protein coding gene Chr4:132477154-132478342 (-)
BALB/cJ MGP_BALBcJ_G0028849
 protein coding gene Chr4:129468085-129469273 (-)
C3H/HeJ MGP_C3HHeJ_G0028563
 protein coding gene Chr4:132734101-132735289 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029291
 protein coding gene Chr4:139293915-139295103 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0027996
 protein coding gene Chr4:130808091-130809288 (-)
CBA/J MGP_CBAJ_G0028529
 protein coding gene Chr4:142866849-142868037 (-)
DBA/2J MGP_DBA2J_G0028678
 protein coding gene Chr4:129281319-129282507 (-)
FVB/NJ MGP_FVBNJ_G0028645
 protein coding gene Chr4:128129574-128130765 (-)
LP/J MGP_LPJ_G0028779
 protein coding gene Chr4:134599745-134600935 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028671
 protein coding gene Chr4:147458828-147460016 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029329
 protein coding gene Chr4:132880842-132882030 (-)
PWK/PhJ MGP_PWKPhJ_G0027717
 protein coding gene Chr4:125959740-125960928 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027543
 protein coding gene Chr4:128753775-128754969 (-)
WSB/EiJ MGP_WSBEiJ_G0028076
 protein coding gene Chr4:133066967-133068156 (-)



Homology
more
  • Human Ortholog
    RAB42, RAB42, member RAS oncogene family
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RAB42, RAB42, member RAS oncogene family
  • Links
    NCBI Gene ID: 115273
    neXtProt AC: NX_Q8N4Z0
    UniProt: Q8N4Z0

  • Chr Location
    1p35.3; chr1:28592200-28596666 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    10
  • Chemically induced (other)
    2
  • Gene trapped
    4
  • Radiation induced
    1
  • Targeted
    3
  • Genomic Mutations
    4 involving Rab42
  • Incidental Mutations
    APF , CvDC
  • Find Mice (IMSR)
    12 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    714
  • Tissues
    2
  • cDNA Data
    9
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000089687 Ensembl Gene Model | MGI Sequence Detail 1189 C57BL/6J ±  kb
transcript ENSMUST00000040411 Ensembl | MGI Sequence Detail 761 Not Applicable  
polypeptide ENSMUSP00000047735 Ensembl | MGI Sequence Detail 215 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 1
References
more
  • Summaries
    All 27
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 9
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory