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Tmem47 Gene Detail
Summary
  • Symbol
    Tmem47
  • Name
    transmembrane protein 47
  • Synonyms
    3010015F07Rik, BCMP1, Tm4sf10
  • Feature Type
    protein coding gene
  • IDs
    MGI:2177570
    NCBI Gene: 192216
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:80114304-80141478 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 38.38 cM, cytoband A7.2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    155 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2177570
 protein coding gene ChrX:80114250-80141481 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035883
 protein coding gene ChrX:76989823-77017285 (+)
A/J MGP_AJ_G0035868
 protein coding gene ChrX:77224391-77251758 (+)
AKR/J MGP_AKRJ_G0035786
 protein coding gene ChrX:79262185-79291888 (+)
BALB/cJ MGP_BALBcJ_G0035849
 protein coding gene ChrX:76012541-76039746 (+)
C3H/HeJ MGP_C3HHeJ_G0035559
 protein coding gene ChrX:77386550-77414416 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036380
 protein coding gene ChrX:79414446-79442501 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033211
 protein coding gene ChrX:76413985-76441330 (+)
CAST/EiJ MGP_CASTEiJ_G0034848
 protein coding gene ChrX:62460438-62488283 (+)
CBA/J MGP_CBAJ_G0035534
 protein coding gene ChrX:81478801-81505772 (+)
DBA/2J MGP_DBA2J_G0035689
 protein coding gene ChrX:76654127-76685301 (+)
FVB/NJ MGP_FVBNJ_G0035628
 protein coding gene ChrX:75975612-76002366 (+)
LP/J MGP_LPJ_G0035778
 protein coding gene ChrX:77833261-77861338 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035665
 protein coding gene ChrX:84533987-84587985 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036407
 protein coding gene ChrX:76779926-76806971 (+)
PWK/PhJ MGP_PWKPhJ_G0034546
 protein coding gene ChrX:60542973-60557074 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034376
 protein coding gene ChrX:63401676-63429718 (+)
WSB/EiJ MGP_WSBEiJ_G0034987
 protein coding gene ChrX:75784184-75812651 (+)



Homology
more
  • Human Ortholog
    TMEM47, transmembrane protein 47
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TMEM47, transmembrane protein 47
  • Synonyms
    BCMP1, TM4SF10, VAB-9
  • Links
    NCBI Gene ID: 83604
    neXtProt AC: NX_Q9BQJ4
    UniProt: Q9BQJ4

  • Chr Location
    Xp21.1; chrX:34627075-34657285 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    831
  • Tissues
    22
  • cDNA Data
    15
  • Literature Summary
    6
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000025666 Ensembl Gene Model | MGI Sequence Detail 27175 C57BL/6J ±  kb
transcript ENSMUST00000171953 Ensembl | MGI Sequence Detail 1801 Not Applicable  
polypeptide ENSMUSP00000129793 Ensembl | MGI Sequence Detail 181 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 16
    cDNA 16

    Microarray probesets 6
Other
Accession IDs
less
MGI:1924083, MGI:3034834
References
more
  • Summaries
    All 37
    Developmental Gene Expression 6
    Gene Ontology 6
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory