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Col26a1 Gene Detail
Summary
  • Symbol
    Col26a1
  • Name
    collagen, type XXVI, alpha 1
  • Synonyms
    9430032K24Rik, Collagen XXVI, Emid2, Emu2, MGC:7475
  • Feature Type
    protein coding gene
  • IDs
    MGI:2155345
    NCBI Gene: 140709
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:136770613-136912063 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 5, 76.03 cM, cytoband G1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    941 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2155345
protein coding gene Chr5:136770613-136912230 (-)
129S1/SvImJ MGP_129S1SvImJ_G0030208
protein coding gene Chr5:141415373-141575953 (-)
A/J MGP_AJ_G0030176
protein coding gene Chr5:135304619-135452089 (-)
AKR/J MGP_AKRJ_G0030109
protein coding gene Chr5:139682123-139829710 (-)
BALB/cJ MGP_BALBcJ_G0030186
protein coding gene Chr5:136661469-136811403 (-)
C3H/HeJ MGP_C3HHeJ_G0029902
protein coding gene Chr5:140294550-140458134 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030638
protein coding gene Chr5:146675362-146835541 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027859
protein coding gene Chr5:129583004-129725280 (-)
CAST/EiJ MGP_CASTEiJ_G0029312
protein coding gene Chr5:139704226-139876809 (-)
CBA/J MGP_CBAJ_G0029872
protein coding gene Chr5:152365014-152569345 (-)
DBA/2J MGP_DBA2J_G0030023
protein coding gene Chr5:135201421-135347978 (-)
FVB/NJ MGP_FVBNJ_G0029978
protein coding gene Chr5:134373600-134524104 (-)
LP/J MGP_LPJ_G0030112
protein coding gene Chr5:141836746-142012673 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0030010
protein coding gene Chr5:155318956-155494694 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030679
protein coding gene Chr5:139500330-139661102 (-)
PWK/PhJ MGP_PWKPhJ_G0029025
protein coding gene Chr5:134284734-134431628 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028861
protein coding gene Chr5:137086718-137249893 (-)
WSB/EiJ MGP_WSBEiJ_G0029385
protein coding gene Chr5:140237900-140401143 (-)



Homology
more
  • Human Ortholog
    COL26A1, collagen type XXVI alpha 1 chain
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    COL26A1, collagen type XXVI alpha 1 chain
  • Synonyms
    EMI6, EMID2, EMU2, SH2B
  • Links
    NCBI Gene ID: 136227
    neXtProt AC: NX_Q96A83
    UniProt: Q96A83

  • Chr Location
    7q22.1; chr7:101362388-101559024 (+)  GRCh38

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000004415 Ensembl Gene Model | MGI Sequence Detail 141451 C57BL/6J ±  kb
    transcript ENSMUST00000057497 Ensembl | MGI Sequence Detail 2724 Not Applicable  
    polypeptide ENSMUSP00000052095 Ensembl | MGI Sequence Detail 440 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 54
      cDNA 53
      Primer pair 1

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:1924594, MGI:1933106, MGI:2653242
    References
    more
    • Summaries
      All 43
      Developmental Gene Expression 7
      Gene Ontology 3
      Phenotypes 8
    • Earliest
      J:7899 Sutton VR, et al., Identification of two forms of the Ly-6.2 antigen showing differential expression. Immunogenetics. 1985;21(6):539-47
    • Latest
      J:335095 Lipp SN, et al., FOXD1 is required for 3D patterning of the kidney interstitial matrix. Dev Dyn. 2023 Apr;252(4):463-482

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    last database update
    03/19/2024
    MGI 6.23
    The Jackson Laboratory