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Synpo2 Gene Detail
Summary
  • Symbol
    Synpo2
  • Name
    synaptopodin 2
  • Synonyms
    1110069I04Rik, 2310068J10Rik, 9530006G20Rik, Myo, myopodin
  • Feature Type
    protein coding gene
  • IDs
    MGI:2153070
    NCBI Gene: 118449
  • Alliance
    genome feature page
  • Transcription Start Sites
    16 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:122870168-123029798 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 53.80 cM, cytoband G3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    5083 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2153070
 protein coding gene Chr3:122870168-123029817 (-)
129S1/SvImJ ENSMUSG00200024725
 protein coding gene Chr3:119566628-119720197 (-)
A/J ENSMUSG00195015541
 protein coding gene Chr3:119780157-119932689 (-)
AKR/J ENSMUSG00220024367
 protein coding gene Chr3:118164227-118324015 (-)
BALB/cJ ENSMUSG00180026824
 protein coding gene Chr3:119716877-119869439 (-)
C3H/HeJ ENSMUSG00175025948
 protein coding gene Chr3:119263421-119415943 (-)
C57BL/6NJ ENSMUSG00215005916
 protein coding gene Chr3:120010163-120169913 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025600
 protein coding gene Chr3:116604588-116755532 (-)
CAST/EiJ ENSTCUG00005029424
 protein coding gene Chr3:120296263-120448949 (-)
CBA/J ENSMUSG00210002769
 protein coding gene Chr3:119894324-120046823 (-)
DBA/2J ENSMUSG00185007045
 protein coding gene Chr3:120453781-120607431 (-)
FVB/NJ ENSMUSG00205006826
 protein coding gene Chr3:118828213-118984970 (-)
JF1/MsJ ENSUMUG00000002765
 protein coding gene Chr3:119259552-119413248 (-)
LP/J ENSMUSG00230003691
 protein coding gene Chr3:122418330-122571902 (-)
NOD/ShiLtJ ENSMUSG00190028792
 protein coding gene Chr3:120839181-120998938 (-)
NZO/HlLtJ ENSMUSG00225002360
 protein coding gene Chr3:124898155-125057897 (-)
PWK/PhJ ENSLUMG00010009273
 protein coding gene Chr3:119269503-119430105 (-)
SPRET/EiJ no annotation
WSB/EiJ ENSIUOG00005006180
 protein coding gene Chr3:120062457-120216601 (-)



Homology
more
  • Human Ortholog
    SYNPO2, synaptopodin 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SYNPO2, synaptopodin 2
  • Links
    NCBI Gene ID: 171024
    UniProt: Q9UMS6

  • Chr Location
    4q26; chr4:118850681-119061247 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotypes from 1 allele in 1 genetic background
    13 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    48
  • GO References
    11
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    599
  • Tissues
    1
  • cDNA Data
    6
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000050315 Ensembl Gene Model | MGI Sequence Detail 159631 C57BL/6J ±  kb
    transcript ENSMUST00000106426 Ensembl | MGI Sequence Detail 7063 Not Applicable  
    polypeptide ENSMUSP00000102034 Ensembl | MGI Sequence Detail 1257 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 7
      cDNA 6
      Other 1

      Microarray probesets 7
    Other
    Accession IDs
    less
    MGI:1916137, MGI:1922069, MGI:2139816, MGI:2443851
    References
    more
    • Summaries
      All 47
      Developmental Gene Expression 1
      Diseases 1
      Gene Ontology 11
      Phenotypes 13
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/01/2026
    MGI 6.24     		The Jackson Laboratory