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Lratd1 Gene Detail
Summary
  • Symbol
    Lratd1
  • Name
    LRAT domain containing 1
  • Synonyms
    2310003N02Rik, 4731402F03Rik, Fam84a
  • Feature Type
    protein coding gene
  • IDs
    MGI:2145011
    NCBI Gene: 105005
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:14197599-14202039 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 6.93 cM, cytoband A3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    62 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2145011
 protein coding gene Chr12:14196831-14202055 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019607
 protein coding gene Chr12:11422598-11427029 (-)
A/J MGP_AJ_G0019573
 protein coding gene Chr12:11077286-11081726 (-)
AKR/J MGP_AKRJ_G0019544
 protein coding gene Chr12:11693506-11697945 (-)
BALB/cJ MGP_BALBcJ_G0019550
 protein coding gene Chr12:11284231-11288670 (-)
C3H/HeJ MGP_C3HHeJ_G0019355
 protein coding gene Chr12:11528536-11532975 (-)
C57BL/6NJ MGP_C57BL6NJ_G0019998
 protein coding gene Chr12:11842023-11846462 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017624
 protein coding gene Chr12:10670265-10674792 (-)
CAST/EiJ MGP_CASTEiJ_G0018910
 protein coding gene Chr12:11399660-11404118 (-)
CBA/J MGP_CBAJ_G0019326
 protein coding gene Chr12:12559976-12564411 (-)
DBA/2J MGP_DBA2J_G0019439
 protein coding gene Chr12:11000956-11005394 (-)
FVB/NJ MGP_FVBNJ_G0019430
 protein coding gene Chr12:10903465-10907904 (-)
LP/J MGP_LPJ_G0019510
 protein coding gene Chr12:11558721-11563146 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019464
 protein coding gene Chr12:12333791-12338230 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020037
 protein coding gene Chr12:11302293-11306724 (-)
PWK/PhJ MGP_PWKPhJ_G0018676
 protein coding gene Chr12:11072668-11077116 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018466
 protein coding gene Chr12:11461135-11465545 (-)
WSB/EiJ MGP_WSBEiJ_G0018961
 protein coding gene Chr12:11421203-11425634 (-)



Homology
more
  • Human Ortholog
    LRATD1, LRAT domain containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LRATD1, LRAT domain containing 1
  • Synonyms
    FAM84A, NSE1, PP11517
  • Links
    NCBI Gene ID: 151354
    neXtProt AC: NX_Q96KN4
    UniProt: Q96KN4

  • Chr Location
    2p24.3; chr2:14632700-14651916 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    4
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    738
  • Tissues
    9
  • cDNA Data
    5
  • Literature Summary
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 105005 NCBI Gene Model | MGI Sequence Detail 4441 C57BL/6J ±  kb
transcript NM_029007 RefSeq | MGI Sequence Detail 3402 Not Specified  
polypeptide Q9D650 UniProt | EBI | MGI Sequence Detail 292 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 7
    cDNA 6
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:1917335, MGI:1921822
References
more
  • Summaries
    All 32
    Developmental Gene Expression 5
    Gene Ontology 4
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory