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Fam90a1a Gene Detail
Summary
  • Symbol
    Fam90a1a
  • Name
    family with sequence similarity 90, member A1A
  • Synonyms
    C86695
  • Feature Type
    protein coding gene
  • IDs
    MGI:2142877
    NCBI Gene: 97476
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr8:22448730-22454319 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 10.70 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    86 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2142877
 protein coding gene Chr8:22448730-22454319 (+)
129S1/SvImJ MGP_129S1SvImJ_G0033440
 protein coding gene Chr8:19794950-19800557 (+)
A/J MGP_AJ_G0033420
 protein coding gene Chr8:19154178-19159785 (+)
AKR/J MGP_AKRJ_G0033345
 protein coding gene Chr8:19783963-19789552 (+)
BALB/cJ MGP_BALBcJ_G0033416
 protein coding gene Chr8:19274131-19279737 (+)
C3H/HeJ MGP_C3HHeJ_G0033130
 protein coding gene Chr8:19970234-19975841 (+)
C57BL/6NJ MGP_C57BL6NJ_G0033932
 protein coding gene Chr8:20642164-20647753 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030889
 protein coding gene Chr8:16489555-16496808 (+)
CAST/EiJ MGP_CASTEiJ_G0032456
 protein coding gene Chr8:19400492-19406135 (+)
CBA/J MGP_CBAJ_G0033105
 protein coding gene Chr8:21464824-21470431 (+)
DBA/2J MGP_DBA2J_G0033260
 protein coding gene Chr8:19128829-19134438 (+)
FVB/NJ MGP_FVBNJ_G0033204
 protein coding gene Chr8:18921865-18927531 (+)
LP/J MGP_LPJ_G0033349
 protein coding gene Chr8:19801494-19807098 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033247
 protein coding gene Chr8:21070642-21076302 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0033951
 protein coding gene Chr8:19675578-19681167 (+)
PWK/PhJ MGP_PWKPhJ_G0032168
 protein coding gene Chr8:18714290-18719957 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032001
 protein coding gene Chr8:19070178-19075816 (+)
WSB/EiJ MGP_WSBEiJ_G0032572
 protein coding gene Chr8:19872082-19877671 (+)



Homology
more
  • Human Ortholog
    FAM90A13, family with sequence similarity 90 member A13
  • Vertebrate Orthologs
    7
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    FAM90A13, family with sequence similarity 90 member A13
  • Synonyms
    FAM90A13P
  • Links
    NCBI Gene ID: 441314
    UniProt: P0C7W8

  • Chr Location
    8p23.1; chr8:7279770-7282780 (+)  GRCh38
  • Human Ortholog
    FAM90A14, family with sequence similarity 90 member A14
  • Synonyms
    FAM90A14P
  • Links
    NCBI Gene ID: 645651
    UniProt: P0C7W9

  • Chr Location
    8p23.1; chr8:7715443-7718453 (+)  GRCh38
  • Human Ortholog
    FAM90A15, family with sequence similarity 90 member A15
  • Synonyms
    FAM90A15P
  • Links
    NCBI Gene ID: 389630
    UniProt: P0C7V4

  • Chr Location
    8p23.1; chr8:7256904-7259914 (+)  GRCh38
  • Human Ortholog
    FAM90A23, family with sequence similarity 90 member A23
  • Synonyms
    FAM90A23P
  • Links
    NCBI Gene ID: 645572
    UniProt: A8MXZ1

  • Chr Location
    8p23.1; chr8:7579644-7582653 (-)  GRCh38
  • Human Ortholog
    FAM90A25P, Putative protein FAM90A2P
  • Synonyms
    FAM90A2P
  • Links
    NCBI Gene ID: 389633
    UniProt: Q658T7

  • Chr Location
    8p23.1; chr8:12414521-12418090 (-)  GRCh38
  • Human Ortholog
    FAM90A2P, family with sequence similarity 90 member A2, pseudogene
  • Links
    NCBI Gene ID: 729689

  • Chr Location
    8p23.1; chr8:12172761-12177267 (-)  GRCh38
  • Human Ortholog
    FAM90A5, family with sequence similarity 90 member A5
  • Synonyms
    FAM90A5P
  • Links
    NCBI Gene ID: 441315
    UniProt: A8MXJ8

  • Chr Location
    8p23.1; chr8:7287392-7290402 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 97476 NCBI Gene Model | MGI Sequence Detail 5590 C57BL/6J ±  kb
transcript NM_001081662 RefSeq | MGI Sequence Detail 1887 C57BL/6  
polypeptide NP_001075131 RefSeq | MGI Sequence Detail 429 C57BL/6  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 2
References
more
  • Summaries
    All 17
    Phenotypes 1
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory