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Itm2c Gene Detail
Summary
  • Symbol
    Itm2c
  • Name
    integral membrane protein 2C
  • Synonyms
    3110038L02Rik, BRI3, Bricd2c, ITM3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1927594
    NCBI Gene: 64294
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:85822231-85836419 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 1, 43.94 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    121 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1927594
protein coding gene Chr1:85822002-85836419 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016236
protein coding gene Chr1:87113613-87128008 (+)
A/J MGP_AJ_G0016217
protein coding gene Chr1:83896867-83911260 (+)
AKR/J MGP_AKRJ_G0016178
protein coding gene Chr1:86321713-86336095 (+)
BALB/cJ MGP_BALBcJ_G0016174
protein coding gene Chr1:84012033-84026430 (+)
C3H/HeJ MGP_C3HHeJ_G0016002
protein coding gene Chr1:86583461-86597900 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016630
protein coding gene Chr1:90446302-90460710 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014352
protein coding gene Chr1:78390303-78404813 (+)
CAST/EiJ MGP_CASTEiJ_G0015587
protein coding gene Chr1:85812835-85829695 (+)
CBA/J MGP_CBAJ_G0015978
protein coding gene Chr1:93246972-93264033 (+)
DBA/2J MGP_DBA2J_G0016080
protein coding gene Chr1:83205828-83220230 (+)
FVB/NJ MGP_FVBNJ_G0016080
protein coding gene Chr1:82250160-82264903 (+)
LP/J MGP_LPJ_G0016152
protein coding gene Chr1:88225680-88240127 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016106
protein coding gene Chr1:96549137-96563525 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016673
protein coding gene Chr1:86450083-86464486 (+)
PWK/PhJ MGP_PWKPhJ_G0015374
protein coding gene Chr1:82486841-82501657 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015154
protein coding gene Chr1:85437924-85452391 (+)
WSB/EiJ MGP_WSBEiJ_G0015651
protein coding gene Chr1:86098470-86112910 (+)



Homology
more
  • Human Ortholog
    ITM2C, integral membrane protein 2C
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ITM2C, integral membrane protein 2C
  • Synonyms
    BRI3, BRICD2C, E25, E25C, ITM3
  • Links
    NCBI Gene ID: 81618
    neXtProt AC: NX_Q9NQX7
    UniProt: Q9NQX7

  • Chr Location
    2q37.1; chr2:230864185-230879254 (+)  GRCh38

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    4 phenotypes from 3 alleles in 3 genetic backgrounds
    1 phenotype from multigenic genotypes
    16 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele are viable, fertile and overtly normal with no alterations in the development, maturation and differentiation of B-lymphocytes or production of antibodies by antibody secreting cells.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 64294 NCBI Gene Model | MGI Sequence Detail 14189 C57BL/6J ±  kb
    transcript NM_022417 RefSeq | MGI Sequence Detail 2024 C57BL/6  
    polypeptide Q91VK4 UniProt | EBI | MGI Sequence Detail 269 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 271
      cDNA 270
      Other 1

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:1924235, MGI:2138489, MGI:2138734
    References
    more
    • Summaries
      All 49
      Developmental Gene Expression 3
      Gene Ontology 5
      Phenotypes 16
    • Earliest
      J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
    • Latest
      J:265892 Trezise S, et al., Mining the Plasma Cell Transcriptome for Novel Cell Surface Proteins. Int J Mol Sci. 2018 Jul 24;19(8):2161

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    last database update
    03/19/2024
    MGI 6.23
    The Jackson Laboratory