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Thyn1 Gene Detail
Summary
  • Symbol
    Thyn1
  • Name
    thymocyte nuclear protein 1
  • Synonyms
    D730042P09Rik, Thy28
  • Feature Type
    protein coding gene
  • IDs
    MGI:1925112
    NCBI Gene: 77862
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:26911006-26918632 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 12.06 cM, cytoband A4
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    56 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925112
 protein coding gene Chr9:26910950-26918632 (+)
129S1/SvImJ MGP_129S1SvImJ_G0034504
 protein coding gene Chr9:24456120-24467759 (+)
A/J MGP_AJ_G0034482
 protein coding gene Chr9:23917903-23925557 (+)
AKR/J MGP_AKRJ_G0034408
 protein coding gene Chr9:24396325-24405364 (+)
BALB/cJ MGP_BALBcJ_G0034473
 protein coding gene Chr9:23801674-23810074 (+)
C3H/HeJ MGP_C3HHeJ_G0034185
 protein coding gene Chr9:24768250-24775903 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034994
 protein coding gene Chr9:25364293-25371946 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031924
 protein coding gene Chr9:22835135-22843497 (+)
CAST/EiJ MGP_CASTEiJ_G0033508
 protein coding gene Chr9:24563345-24573729 (+)
CBA/J MGP_CBAJ_G0034158
 protein coding gene Chr9:26269748-26282560 (+)
DBA/2J MGP_DBA2J_G0034316
 protein coding gene Chr9:23949191-23956841 (+)
FVB/NJ MGP_FVBNJ_G0034259
 protein coding gene Chr9:23373976-23384793 (+)
LP/J MGP_LPJ_G0034402
 protein coding gene Chr9:24655407-24664617 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034303
 protein coding gene Chr9:27964707-27976801 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035014
 protein coding gene Chr9:24380013-24391507 (+)
PWK/PhJ MGP_PWKPhJ_G0033213
 protein coding gene Chr9:23850183-23859777 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033047
 protein coding gene Chr9:24435101-24444851 (+)
WSB/EiJ MGP_WSBEiJ_G0033623
 protein coding gene Chr9:24107247-24115953 (+)



Homology
more
  • Human Ortholog
    THYN1, thymocyte nuclear protein 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    THYN1, thymocyte nuclear protein 1
  • Synonyms
    HSPC144, MDS012, MY105, THY28, THY28KD
  • Links
    NCBI Gene ID: 29087
    neXtProt AC: NX_Q9P016
    UniProt: Q9P016

  • Chr Location
    11q25; chr11:134248279-134253370 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    9 phenotype references
Mice homozygous for a knock-out allele are viable and show normal B cell development.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    7
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000035443 Ensembl Gene Model | MGI Sequence Detail 7627 C57BL/6J ±  kb
transcript ENSMUST00000213683 Ensembl | MGI Sequence Detail 1107 Not Applicable  
polypeptide ENSMUSP00000150823 Ensembl | MGI Sequence Detail 226 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 8
    cDNA 7
    Primer pair 1

    Microarray probesets 5
References
more
  • Summaries
    All 30
    Gene Ontology 2
    Phenotypes 9
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:277335 Kitaura F, et al., Normal B cell development and Pax5 expression in Thy28/ThyN1-deficient mice. PLoS One. 2019;14(7):e0220199
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory