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H2az2 Gene Detail
Summary
  • Symbol
    H2az2
  • Name
    H2A.Z histone variant 2
  • Synonyms
    C530002L11Rik, H2afv, H2A.Z2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924855
    NCBI Gene: 77605
  • Alliance
    genome feature page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:6377229-6394443 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 4.01 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    508 from dbSNP Build 142
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924855
 protein coding gene Chr11:6377226-6394511 (-)
129S1/SvImJ ENSMUSG00200032470
 protein coding gene Chr11:3319129-3336375 (-)
A/J ENSMUSG00195020709
 protein coding gene Chr11:3242279-3259554 (-)
AKR/J ENSMUSG00220007646
 protein coding gene Chr11:3271602-3288876 (-)
BALB/cJ ENSMUSG00180022443
 protein coding gene Chr11:3267525-3284820 (-)
C3H/HeJ ENSMUSG00175009753
 protein coding gene Chr11:3245439-3262750 (-)
C57BL/6NJ ENSMUSG00215019054
 protein coding gene Chr11:3266576-3283794 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0016074
 protein coding gene Chr11:3282877-3301214 (-)
CAST/EiJ no annotation
CBA/J ENSMUSG00210017902
 protein coding gene Chr11:3255575-3272790 (-)
DBA/2J ENSMUSG00185016745
 protein coding gene Chr11:3353355-3370574 (-)
FVB/NJ ENSMUSG00205018074
 protein coding gene Chr11:3226571-3243789 (-)
JF1/MsJ no annotation
LP/J ENSMUSG00230028947
 protein coding gene Chr11:4419774-4437069 (-)
NOD/ShiLtJ ENSMUSG00190038419
 protein coding gene Chr11:3234777-3252051 (-)
NZO/HlLtJ ENSMUSG00225024982
 protein coding gene Chr11:6458221-6475438 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    H2AZ2, H2A.Z variant histone 2
  • Vertebrate Orthologs
    6
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    H2AZ2, H2A.Z variant histone 2
  • Synonyms
    H2AFV, H2AV, H2A.Z-2
  • Links
    NCBI Gene ID: 94239
    UniProt: Q71UI9

  • Chr Location
    7p13; chr7:44826791-44848146 (-)  GRCh38
Human Diseases
less
  • Mutations/Alleles
    1 with disease annotations
  • References
    22 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    751 phenotypes from multigenic genotypes
    19 images
    916 phenotype references
Mice homozygous for a conditional allele of H2az1 and H2az2 activated in intestinal cells exhibit reduced growth and crypt dysfunction.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    14
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    749
  • Tissues
    25
  • cDNA Data
    130
  • Literature Summary
    6
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000041126 Ensembl Gene Model | MGI Sequence Detail 17215 C57BL/6J ±  kb
transcript ENSMUST00000109737 Ensembl | MGI Sequence Detail 1633 Not Applicable  
polypeptide ENSMUSP00000105359 Ensembl | MGI Sequence Detail 128 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 136
    Genomic 1
    cDNA 130
    Primer pair 5
    Antibodies 2

    Microarray probesets 3
Other
Accession IDs
less
MGI:2447280, MGI:6358823
References
more
  • Summaries
    All 950
    Developmental Gene Expression 6
    Diseases 22
    Gene Ontology 5
    Phenotypes 916
  • Earliest
    J:69326 Danielian PS, et al., Modification of gene activity in mouse embryos in utero by a tamoxifen-inducible form of Cre recombinase. Curr Biol. 1998 Dec 3;8(24):1323-6
  • Latest
    J:391092 Zeng W, et al., Chromatin Remodeller BRD9 Orchestrates Odontoblastic Differentiation via Coordinating RUNX2-KLF4. Cell Prolif. 2026 Aug 6;:e70269
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory