About   Help   FAQ
Snx29 Gene Detail
Summary
  • Symbol
    Snx29
  • Name
    sorting nexin 29
  • Synonyms
    4933437K13Rik, Gm11170, LOC381035, LOC385605, Rundc2a
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921728
    NCBI Gene: 74478
  • Alliance
  • Transcription Start Sites
    28 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:11140772-11573336 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 16, 6.46 cM, cytoband B1
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    10606 from dbSNP Build 142
  • Strain Annotations
    26
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921728
protein coding gene Chr16:11140719-11576959 (+)
129S1/SvImJ ENSMUSGG00200054951
protein coding gene Chr16:8223620-8568820 (+)
129S1/SvImJ ENSMUSG00200009448
protein coding gene Chr16:8146839-8221808 (+)
A/J ENSMUSGG00195055229
protein coding gene Chr16:7768110-8117600 (+)
A/J ENSMUSG00195011500
protein coding gene Chr16:7684809-7766298 (+)
AKR/J ENSMUSGG00220054609
protein coding gene Chr16:8057111-8406601 (+)
AKR/J ENSMUSG00220017025
protein coding gene Chr16:7973624-8055299 (+)
BALB/cJ ENSMUSG00180007938
protein coding gene Chr16:7924046-8005488 (+)
BALB/cJ ENSMUSGG00180055268
protein coding gene Chr16:8007300-8356792 (+)
C3H/HeJ ENSMUSGG00175054870
protein coding gene Chr16:8191327-8540691 (+)
C3H/HeJ ENSMUSG00175027098
protein coding gene Chr16:8113780-8189515 (+)
C57BL/6NJ ENSMUSG00215014412
protein coding gene Chr16:7790677-7872327 (+)
C57BL/6NJ ENSMUSGG00215055514
protein coding gene Chr16:7874139-8231964 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020460
protein coding gene Chr16:7903051-8321649 (+)
CAST/EiJ no annotation
CBA/J ENSMUSGG00210054787
protein coding gene Chr16:8208368-8557748 (+)
CBA/J ENSMUSG00210011187
protein coding gene Chr16:8130932-8206556 (+)
DBA/2J ENSMUSGG00185057656
protein coding gene Chr16:8153808-8503172 (+)
DBA/2J ENSMUSG00185009393
protein coding gene Chr16:8076245-8151996 (+)
FVB/NJ ENSMUSGG00205054109
protein coding gene Chr16:8077453-8472118 (+)
FVB/NJ ENSMUSG00205011344
protein coding gene Chr16:7994053-8075641 (+)
JF1/MsJ no annotation
LP/J ENSMUSGG00230055777
protein coding gene Chr16:10719374-11064568 (+)
LP/J ENSMUSG00230045013
protein coding gene Chr16:10642588-10717562 (+)
NOD/ShiLtJ ENSMUSGG00190054947
protein coding gene Chr16:8259583-8609519 (+)
NOD/ShiLtJ ENSMUSG00190024210
protein coding gene Chr16:8176185-8257771 (+)
NZO/HlLtJ ENSMUSG00225030692
protein coding gene Chr16:13860486-13942155 (+)
NZO/HlLtJ ENSMUSGG00225055260
protein coding gene Chr16:13943967-14293460 (+)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    SNX29, sorting nexin 29
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SNX29, sorting nexin 29
  • Synonyms
    A-388D4.1, RUNDC2A
  • Links
    NCBI Gene ID: 92017
    UniProt: Q8TEQ0

  • Chr Location
    16p13.13-p13.12; chr16:11976734-12574287 (+)  GRCh38

  • Human Ortholog
    SNX29P2, sorting nexin 29 pseudogene 2
  • Synonyms
    RUNDC2C
  • Links
    NCBI Gene ID: 440352

  • Chr Location
    16p11.2; chr16:29302287-29365059 (+)  GRCh38

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    13 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
  • Comparison Matrix
  • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000071669 Ensembl Gene Model | MGI Sequence Detail 432565 C57BL/6J ±  kb
    transcript ENSMUST00000180792 Ensembl | MGI Sequence Detail 2667 Not Applicable  
    polypeptide ENSMUSP00000138025 Ensembl | MGI Sequence Detail 818 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 14
      cDNA 14

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2685776, MGI:2686583, MGI:3779425
    References
    more
    • Summaries
      All 36
      Gene Ontology 1
      Phenotypes 13
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
    Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
    Send questions and comments to User Support.
    last database update
    09/08/2026
    MGI 6.24
    The Jackson Laboratory