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Arl13a Gene Detail
Summary
  • Symbol
    Arl13a
  • Name
    ADP-ribosylation factor-like 13A
  • Synonyms
    4933422M21Rik, Arl13
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921698
    NCBI Gene: 74448
  • Alliance
    genome feature page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:133088250-133108777 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 55.90 cM, cytoband E3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    457 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921698
 protein coding gene ChrX:133088250-133108779 (+)
129S1/SvImJ ENSMUSG00200011101
 protein coding gene ChrX:112151971-112172494 (+)
A/J ENSMUSG00195045342
 protein coding gene ChrX:116013868-116034398 (+)
AKR/J ENSMUSG00220012788
 protein coding gene ChrX:109625016-109645543 (+)
BALB/cJ ENSMUSG00180018483
 protein coding gene ChrX:112432024-112452551 (+)
C3H/HeJ ENSMUSG00175029747
 protein coding gene ChrX:116280395-116300923 (+)
C57BL/6NJ ENSMUSG00215042962
 protein coding gene ChrX:112794162-112814692 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033386
 protein coding gene ChrX:122967581-122987440 (+)
CAST/EiJ ENSTCUG00005038837
 protein coding gene ChrX:113601973-113622491 (+)
CBA/J ENSMUSG00210035105
 protein coding gene ChrX:113182029-113202552 (+)
DBA/2J ENSMUSG00185028772
 protein coding gene ChrX:127106478-127127005 (+)
FVB/NJ ENSMUSG00205011876
 protein coding gene ChrX:111802657-111823185 (+)
JF1/MsJ ENSUMUG00000015618
 protein coding gene ChrX:146257523-146277322 (+)
LP/J ENSMUSG00230039523
 protein coding gene ChrX:133795176-133815697 (+)
NOD/ShiLtJ ENSMUSG00190027869
 protein coding gene ChrX:112610433-112630966 (+)
NZO/HlLtJ ENSMUSG00225036865
 protein coding gene ChrX:138448920-138469394 (+)
PWK/PhJ ENSLUMG00010008921
 protein coding gene ChrX:110926713-110946456 (+)
SPRET/EiJ ENSMSPG00010037658
 protein coding gene ChrX:115771127-115791009 (+)
WSB/EiJ ENSIUOG00005034988
 protein coding gene ChrX:113349877-113370412 (+)



Homology
more
  • Human Ortholog
    ARL13A, ARF like GTPase 13A
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ARL13A, ARF like GTPase 13A
  • Synonyms
    ARL13, dJ341D10.2
  • Links
    NCBI Gene ID: 392509
    UniProt: Q5H913

  • Chr Location
    Xq22.1; chrX:100969708-100990831 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    8
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000052549 Ensembl Gene Model | MGI Sequence Detail 20528 C57BL/6J ±  kb
transcript ENSMUST00000064476 Ensembl | MGI Sequence Detail 1740 Not Applicable  
polypeptide ENSMUSP00000064416 Ensembl | MGI Sequence Detail 372 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000004276 ADP-ribosylation factor-like protein 13A
    (term hierarchy)
  • InterPro Domains
    IPR051995 Ciliary function-associated GTPase
    IPR027417 P-loop containing nucleoside triphosphate hydrolase
    IPR006689 Small GTPase superfamily, ARF/SAR type
    IPR005225 Small GTP-binding domain
  • GlyGen
    Q9D416 1 site, 1 N-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 6
    Genomic 4
    cDNA 2

    Microarray probesets 2
References
more
  • Summaries
    All 24
    Gene Ontology 3
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/01/2026
MGI 6.24 		The Jackson Laboratory