About   Help   FAQ
Cldn34c1 Gene Detail
Summary
  • Symbol
    Cldn34c1
  • Name
    claudin 34C1
  • Synonyms
    3110007F17Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920311
    NCBI Gene: 73061
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:122013220-122055351 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 49.81 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    42 from dbSNP Build 142
  • Strain Annotations
    8
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920311
 protein coding gene ChrX:122013192-122098492 (+)
129S1/SvImJ no annotation
A/J MGP_AJ_G0036029
 protein coding gene ChrX:122640996-122647660 (-)
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0036021
 protein coding gene ChrX:121121877-121124911 (-)
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0035702
 protein coding gene ChrX:130584819-130623873 (-)
DBA/2J MGP_DBA2J_G0035854
 protein coding gene ChrX:119674354-119683652 (+)
FVB/NJ no annotation
LP/J MGP_LPJ_G0035947
 protein coding gene ChrX:121963610-121967783 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0036572
 protein coding gene ChrX:120025779-120027745 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0034536
 protein coding gene ChrX:105012349-105015409 (-)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    CLDN34, claudin 34
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    8
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 73061 NCBI Gene Model | MGI Sequence Detail 42132 C57BL/6J ±  kb
transcript NM_028426 RefSeq | MGI Sequence Detail 3317 C57BL/6  
polypeptide NP_001297581 RefSeq | MGI Sequence Detail 257 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR006187 Claudin
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 8
References
more
  • Summaries
    All 23
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory