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Spats2 Gene Detail
Summary
  • Symbol
    Spats2
  • Name
    spermatogenesis associated, serine-rich 2
  • Synonyms
    2700012F11Rik, 59kDa, p59scr, Scr59
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919822
    NCBI Gene: 72572
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:99023797-99111096 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 56.01 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    410 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919822
 protein coding gene Chr15:99023783-99111096 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022324
 protein coding gene Chr15:100938362-101024799 (+)
A/J MGP_AJ_G0022282
 protein coding gene Chr15:96928645-97017128 (+)
AKR/J MGP_AKRJ_G0022258
 protein coding gene Chr15:99912646-100008439 (+)
BALB/cJ MGP_BALBcJ_G0022288
 protein coding gene Chr15:97119808-97207427 (+)
C3H/HeJ MGP_C3HHeJ_G0022056
 protein coding gene Chr15:99969315-100062085 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022733
 protein coding gene Chr15:104691756-104785281 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020259
 protein coding gene Chr15:92838339-92916997 (+)
CAST/EiJ MGP_CASTEiJ_G0021580
 protein coding gene Chr15:100834787-100921132 (+)
CBA/J MGP_CBAJ_G0022025
 protein coding gene Chr15:108253780-108362241 (+)
DBA/2J MGP_DBA2J_G0022152
 protein coding gene Chr15:96377896-96461504 (+)
FVB/NJ MGP_FVBNJ_G0022132
 protein coding gene Chr15:95357968-95442915 (+)
LP/J MGP_LPJ_G0022223
 protein coding gene Chr15:101071041-101169868 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022152
 protein coding gene Chr15:112210761-112306201 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022748
 protein coding gene Chr15:100008204-100096116 (+)
PWK/PhJ MGP_PWKPhJ_G0021319
 protein coding gene Chr15:96504834-96590580 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021154
 protein coding gene Chr15:99864238-99956732 (+)
WSB/EiJ MGP_WSBEiJ_G0021631
 protein coding gene Chr15:100541914-100629599 (+)



Homology
more
  • Human Ortholog
    SPATS2, spermatogenesis associated serine rich 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SPATS2, spermatogenesis associated serine rich 2
  • Synonyms
    Nbla00526, P59SCR, SCR59, SPATA10
  • Links
    NCBI Gene ID: 65244
    neXtProt AC: NX_Q86XZ4
    UniProt: Q86XZ4

  • Chr Location
    12q13.12; chr12:49366584-49527425 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    32 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    4
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    137
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000051934 Ensembl Gene Model | MGI Sequence Detail 87300 C57BL/6J ±  kb
transcript ENSMUST00000063517 Ensembl | MGI Sequence Detail 3096 Not Applicable  
polypeptide ENSMUSP00000070549 Ensembl | MGI Sequence Detail 545 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 137
    cDNA 137

    Microarray probesets 3
References
more
  • Summaries
    All 56
    Diseases 1
    Gene Ontology 4
    Phenotypes 32
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory