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Lysmd1 Gene Detail
Summary
  • Symbol
    Lysmd1
  • Name
    LysM, putative peptidoglycan-binding, domain containing 1
  • Synonyms
    2610022K04Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919409
    NCBI Gene: 217779
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:95041399-95046829 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 3, 40.74 cM, cytoband F2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    50 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919409
protein coding gene Chr3:95041399-95046836 (+)
129S1/SvImJ MGP_129S1SvImJ_G0027571
protein coding gene Chr3:95828774-95834267 (+)
A/J MGP_AJ_G0027529
protein coding gene Chr3:92873585-92880624 (+)
AKR/J MGP_AKRJ_G0027496
protein coding gene Chr3:95015431-95023491 (+)
BALB/cJ MGP_BALBcJ_G0027541
protein coding gene Chr3:92642206-92649994 (+)
C3H/HeJ MGP_C3HHeJ_G0027274
protein coding gene Chr3:95295710-95302962 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027989
protein coding gene Chr3:99394093-99401716 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025329
protein coding gene Chr3:89234306-89239922 (+)
CAST/EiJ MGP_CASTEiJ_G0026724
protein coding gene Chr3:94582000-94587419 (+)
CBA/J MGP_CBAJ_G0027252
protein coding gene Chr3:103001047-103006849 (+)
DBA/2J MGP_DBA2J_G0027390
protein coding gene Chr3:92165612-92173021 (+)
FVB/NJ MGP_FVBNJ_G0027361
protein coding gene Chr3:90235688-90241118 (+)
LP/J MGP_LPJ_G0027499
protein coding gene Chr3:97119473-97130412 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0027388
protein coding gene Chr3:109126493-109132732 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028043
protein coding gene Chr3:94671266-94678105 (+)
PWK/PhJ MGP_PWKPhJ_G0026452
protein coding gene Chr3:92042246-92047673 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026273
protein coding gene Chr3:92966401-92971790 (+)
WSB/EiJ MGP_WSBEiJ_G0026806
protein coding gene Chr3:95055068-95060969 (+)



Homology
more
  • Human Ortholog
    LYSMD1, LysM domain containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LYSMD1, LysM domain containing 1
  • Synonyms
    SB145
  • Links
    NCBI Gene ID: 388695
    neXtProt AC: NX_Q96S90
    UniProt: Q96S90

  • Chr Location
    1q21.3; chr1:151148496-151165948 (-)  GRCh38

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    12 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
  • Comparison Matrix
  • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000053769 Ensembl Gene Model | MGI Sequence Detail 5431 C57BL/6J ±  kb
    transcript ENSMUST00000066386 Ensembl | MGI Sequence Detail 2394 Not Applicable  
    polypeptide ENSMUSP00000067811 Ensembl | MGI Sequence Detail 226 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      2 Sequences
    • Protein Ontology
      PR:000029615 LysM and putative peptidoglycan-binding domain-containing protein 1
    • InterPro Domains
      IPR045030 LysM and putative peptidoglycan-binding domain-containing protein 1-4
      IPR018392 LysM domain
      IPR036779 LysM domain superfamily
    Molecular
    Reagents
    less
    • All nucleic 9
      cDNA 9

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2139696
    References
    more
    • Summaries
      All 34
      Diseases 1
      Gene Ontology 1
      Phenotypes 12
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    last database update
    03/19/2024
    MGI 6.23
    The Jackson Laboratory