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Lysmd1 Gene Detail
Summary
  • Symbol
    Lysmd1
  • Name
    LysM, putative peptidoglycan-binding, domain containing 1
  • Synonyms
    2610022K04Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919409
    NCBI Gene: 217779
  • Alliance
    genome feature page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:95041399-95046829 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 40.74 cM, cytoband F2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    208 from dbSNP Build 142
  • Strain Annotations
    31
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919409
 protein coding gene Chr3:95041399-95046836 (+)
129S1/SvImJ ENSMUSG00200017717
 protein coding gene Chr12:85677208-85679624 (-)
129S1/SvImJ ENSMUSG00200043625
 protein coding gene Chr3:91698405-91703836 (+)
A/J ENSMUSG00195033097
 protein coding gene Chr12:88232305-88234840 (-)
A/J ENSMUSG00195046637
 protein coding gene Chr3:92023435-92028866 (+)
AKR/J ENSMUSG00220017606
 protein coding gene Chr12:86039638-86042173 (-)
AKR/J ENSMUSG00220049375
 protein coding gene Chr3:90410464-90415894 (+)
BALB/cJ ENSMUSG00180015364
 protein coding gene Chr12:87375840-87378375 (-)
BALB/cJ ENSMUSG00180031555
 protein coding gene Chr3:92023168-92028599 (+)
C3H/HeJ ENSMUSG00175024661
 protein coding gene Chr3:91667126-91672557 (+)
C3H/HeJ ENSMUSG00175034718
 protein coding gene Chr12:90008467-90011002 (-)
C57BL/6NJ ENSMUSG00215016844
 protein coding gene Chr12:86660501-86662917 (-)
C57BL/6NJ ENSMUSG00215026109
 protein coding gene Chr3:92385887-92391317 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025329
 protein coding gene Chr3:89234306-89239922 (+)
CAST/EiJ ENSTCUG00005043711
 protein coding gene Chr3:92230067-92235487 (+)
CBA/J ENSMUSG00210050938
 protein coding gene Chr3:92204602-92210033 (+)
CBA/J ENSMUSG00210018664
 protein coding gene Chr12:87042911-87045446 (-)
DBA/2J ENSMUSG00185002367
 protein coding gene Chr12:88824496-88827031 (-)
DBA/2J ENSMUSG00185039489
 protein coding gene Chr3:92621224-92626655 (+)
FVB/NJ ENSMUSG00205029431
 protein coding gene Chr3:91320909-91326338 (+)
FVB/NJ ENSMUSG00205000557
 protein coding gene Chr12:86217095-86219630 (-)
JF1/MsJ ENSUMUG00000040777
 protein coding gene Chr3:91522480-91527905 (+)
LP/J ENSMUSG00230004446
 protein coding gene Chr12:95952415-95954831 (-)
LP/J ENSMUSG00230044131
 protein coding gene Chr3:94561885-94567316 (+)
NOD/ShiLtJ ENSMUSG00190039834
 protein coding gene Chr3:92714584-92720015 (+)
NOD/ShiLtJ ENSMUSG00190005076
 protein coding gene Chr12:99115171-99117694 (+)
NZO/HlLtJ ENSMUSG00225011988
 protein coding gene Chr3:96984673-96990103 (+)
NZO/HlLtJ ENSMUSG00225033406
 protein coding gene Chr12:97662365-97664900 (-)
PWK/PhJ ENSLUMG00010048894
 protein coding gene Chr3:91502364-91507791 (+)
SPRET/EiJ ENSMSPG00010042185
 protein coding gene Chr3:91808308-91813351 (+)
WSB/EiJ ENSIUOG00005025017
 protein coding gene Chr3:92143878-92149309 (+)



Homology
more
  • Human Ortholog
    LYSMD1, LysM domain containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LYSMD1, LysM domain containing 1
  • Synonyms
    SB145
  • Links
    NCBI Gene ID: 388695
    UniProt: Q96S90

  • Chr Location
    1q21.3; chr1:151148496-151165948 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    14 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    8
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000053769 Ensembl Gene Model | MGI Sequence Detail 5431 C57BL/6J ±  kb
    transcript ENSMUST00000066386 Ensembl | MGI Sequence Detail 2394 Not Applicable  
    polypeptide ENSMUSP00000067811 Ensembl | MGI Sequence Detail 226 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      2 Sequences
    • Protein Ontology
      PR:000029615 LysM and putative peptidoglycan-binding domain-containing protein 1
      (term hierarchy)
    • InterPro Domains
      IPR045030 LysM and putative peptidoglycan-binding domain-containing protein 1-4
      IPR018392 LysM domain
      IPR036779 LysM domain superfamily
    Molecular
    Reagents
    less
    • All nucleic 9
      cDNA 9

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2139696
    References
    more
    • Summaries
      All 38
      Diseases 1
      Gene Ontology 2
      Phenotypes 14
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/15/2026
    MGI 6.29     		The Jackson Laboratory