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3300002A11Rik Gene Detail
Summary
  • Symbol
    3300002A11Rik
  • Name
    RIKEN cDNA 3300002A11 gene
  • Synonyms
    2700016B18Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1919073
    NCBI Gene: 100503812
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:99307290-99328086 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 50.00 cM, cytoband F1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    228 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919073
 lncRNA gene Chr12:99307290-99328087 (+)
129S1/SvImJ MGP_129S1SvImJ_G0003157
 antisense lncRNA gene Chr12:100745484-100767170 (+)
A/J MGP_AJ_G0003133
 antisense lncRNA gene Chr12:96976724-96998313 (+)
AKR/J MGP_AKRJ_G0003113
 antisense lncRNA gene Chr12:99589385-99615001 (+)
BALB/cJ MGP_BALBcJ_G0003120
 antisense lncRNA gene Chr12:97323708-97344873 (+)
C3H/HeJ MGP_C3HHeJ_G0003076
 antisense lncRNA gene Chr12:100133996-100156794 (+)
C57BL/6NJ MGP_C57BL6NJ_G0003263
 antisense lncRNA gene Chr12:103852140-103875518 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002796
 antisense lncRNA gene Chr12:93947659-93968780 (+)
CAST/EiJ MGP_CASTEiJ_G0003045
 antisense lncRNA gene Chr12:95212966-95237460 (+)
CBA/J MGP_CBAJ_G0003073
 antisense lncRNA gene Chr12:107696064-107716623 (+)
DBA/2J MGP_DBA2J_G0003078
 antisense lncRNA gene Chr12:96408553-96429755 (+)
FVB/NJ MGP_FVBNJ_G0003098
 antisense lncRNA gene Chr12:95123541-95144108 (+)
LP/J MGP_LPJ_G0003153
 antisense lncRNA gene Chr12:100594575-100617816 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0003087
 antisense lncRNA gene Chr12:111367265-111390107 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0003267
 antisense lncRNA gene Chr12:99157442-99178844 (+)
PWK/PhJ MGP_PWKPhJ_G0003003
 antisense lncRNA gene Chr12:91026618-91047388 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002947
 antisense lncRNA gene Chr12:93315330-93337700 (+)
WSB/EiJ MGP_WSBEiJ_G0003076
 antisense lncRNA gene Chr12:99995165-100016687 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    7
  • Chemically induced (other)
    1
  • Gene trapped
    4
  • Targeted
    2
  • Genomic Mutations
    1 involving 3300002A11Rik
  • Find Mice (IMSR)
    3 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    4
Sequences &
Gene Models
less
  • All Sequences
    28
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000033731 Ensembl Gene Model | MGI Sequence Detail 20797 C57BL/6J ±  kb
transcript ENSMUST00000046994 Ensembl | MGI Sequence Detail 654 Not Applicable  
polypeptide Q9CXH4 UniProt | EBI | MGI Sequence Detail 142 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 4
Other
Accession IDs
less
MGI:1919851
References
more
  • Summaries
    All 23
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:274872 Ingham NJ, et al., Mouse screen reveals multiple new genes underlying mouse and human hearing loss. PLoS Biol. 2019 Apr;17(4):e3000194
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory