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Atraid Gene Detail
Summary
  • Symbol
    Atraid
  • Name
    all-trans retinoic acid induced differentiation factor
  • Synonyms
    0610007C21Rik, HSPC013, p18
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918918
    NCBI Gene: 381629
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:31205984-31211977 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 16.94 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    47 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918918
 protein coding gene Chr5:31205656-31211977 (+)
129S1/SvImJ MGP_129S1SvImJ_G0029406
 protein coding gene Chr5:29016058-29024058 (+)
A/J MGP_AJ_G0029372
 protein coding gene Chr5:28073584-28079912 (+)
AKR/J MGP_AKRJ_G0029323
 protein coding gene Chr5:29223016-29231197 (+)
BALB/cJ MGP_BALBcJ_G0029383
 protein coding gene Chr5:28590983-28597315 (+)
C3H/HeJ MGP_C3HHeJ_G0029104
 protein coding gene Chr5:29236906-29244109 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029836
 protein coding gene Chr5:30806071-30817061 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027074
 protein coding gene Chr5:25543499-25549813 (+)
CAST/EiJ MGP_CASTEiJ_G0028514
 protein coding gene Chr5:28323029-28329227 (+)
CBA/J MGP_CBAJ_G0029072
 protein coding gene Chr5:31378813-31391800 (+)
DBA/2J MGP_DBA2J_G0029221
 protein coding gene Chr5:28251611-28258013 (+)
FVB/NJ MGP_FVBNJ_G0029179
 protein coding gene Chr5:27667958-27675749 (+)
LP/J MGP_LPJ_G0029306
 protein coding gene Chr5:29478895-29485090 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029208
 protein coding gene Chr5:32262088-32270093 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029870
 protein coding gene Chr5:28729156-28738430 (+)
PWK/PhJ MGP_PWKPhJ_G0028239
 protein coding gene Chr5:27373851-27380161 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028069
 protein coding gene Chr5:28104458-28111343 (+)
WSB/EiJ MGP_WSBEiJ_G0028595
 protein coding gene Chr5:28797346-28803644 (+)



Homology
more
  • Human Ortholog
    ATRAID, all-trans retinoic acid induced differentiation factor
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ATRAID, all-trans retinoic acid induced differentiation factor
  • Synonyms
    APR3, APR-3, APR--3, C2orf28, HSPC013, p18, PRO240
  • Links
    NCBI Gene ID: 51374
    neXtProt AC: NX_Q6UW56
    UniProt: Q6UW56

  • Chr Location
    2p23.3; chr2:27212041-27217183 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    29 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice heterozygous or homozygous for a gene trap mutation exhibit cataracts.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    25
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    708
  • Tissues
    2
  • cDNA Data
    73
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 381629 NCBI Gene Model | MGI Sequence Detail 5994 C57BL/6J ±  kb
    transcript NM_027855 RefSeq | MGI Sequence Detail 971 C57BL/6  
    polypeptide Q6PGD0 UniProt | EBI | MGI Sequence Detail 223 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 73
      cDNA 73

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:2140831
    References
    more
    • Summaries
      All 60
      Developmental Gene Expression 1
      Diseases 1
      Gene Ontology 7
      Phenotypes 29
    • Earliest
      J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
    • Latest
      J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/16/2024
    MGI 6.23     		The Jackson Laboratory