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5430416N02Rik Gene Detail
Summary
  • Symbol
    5430416N02Rik
  • Name
    RIKEN cDNA 5430416N02 gene
  • Synonyms
    Gm3514
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1918676
    NCBI Gene: 100503199
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:100568701-100577394 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 48.48 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    61 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918676
 lncRNA gene Chr5:100568379-100577449 (-)
129S1/SvImJ MGP_129S1SvImJ_G0006718
 lincRNA gene Chr5:101901656-101911910 (-)
A/J MGP_AJ_G0006712
 lincRNA gene Chr5:98111044-98120564 (-)
AKR/J MGP_AKRJ_G0006682
 lincRNA gene Chr5:101342947-101353376 (-)
BALB/cJ MGP_BALBcJ_G0006687
 lincRNA gene Chr5:99140469-99150798 (-)
C3H/HeJ MGP_C3HHeJ_G0006633
 lincRNA gene Chr5:101692881-101702446 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006852
 lincRNA gene Chr5:106134533-106144457 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006109
 lincRNA gene Chr5:93347534-93355371 (-)
CAST/EiJ MGP_CASTEiJ_G0006556
 lincRNA gene Chr5:100342171-100355267 (-)
CBA/J MGP_CBAJ_G0006614
 lincRNA gene Chr5:109819075-109827310 (-)
DBA/2J MGP_DBA2J_G0006635
 lincRNA gene Chr5:98299848-98308553 (-)
FVB/NJ MGP_FVBNJ_G0006659
 lincRNA gene Chr5:97105626-97113724 (-)
LP/J MGP_LPJ_G0006719
 lincRNA gene Chr5:102517070-102527222 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006643
 lincRNA gene Chr5:114900640-114912762 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006854
 lincRNA gene Chr5:100823797-100834359 (-)
PWK/PhJ MGP_PWKPhJ_G0006495
 lincRNA gene Chr5:96731950-96740790 (-)
SPRET/EiJ MGP_SPRETEiJ_G0006401
 lincRNA gene Chr5:98486401-98495686 (-)
WSB/EiJ MGP_WSBEiJ_G0006607
 lincRNA gene Chr5:101158170-101168619 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Spontaneous
    1
  • Genomic Mutations
    3 involving 5430416N02Rik
  • Find Mice (IMSR)
    1 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    23
Sequences &
Gene Models
less
  • All Sequences
    37
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100503199 NCBI Gene Model | MGI Sequence Detail 8694 C57BL/6J ±  kb
transcript NR_034038 RefSeq | MGI Sequence Detail 626 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 24
    cDNA 24

    Microarray probesets 1
Other
Accession IDs
less
MGI:3781691
References
more
  • Summaries
    All 20
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:223994 Zangrando J, et al., Identification of candidate long non-coding RNAs in response to myocardial infarction. BMC Genomics. 2014;15:460
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory