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Rpf1 Gene Detail
Summary
  • Symbol
    Rpf1
  • Name
    ribosome production factor 1 homolog
  • Synonyms
    2210420E24Rik, 2310066N05Rik, Bxdc5
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917535
    NCBI Gene: 70285
  • Alliance
    genome feature page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:146212099-146227184 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 71.57 cM, cytoband H3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    552 from dbSNP Build 142
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917535
 protein coding gene Chr3:146211711-146227184 (-)
129S1/SvImJ ENSMUSGG00200054771
 protein coding gene Chr3:143137249-143147847 (-)
A/J ENSMUSGG00195055314
 protein coding gene Chr3:143250372-143260952 (-)
AKR/J ENSMUSGG00220054500
 protein coding gene Chr3:141665117-141675716 (-)
BALB/cJ ENSMUSGG00180055405
 protein coding gene Chr3:143120787-143131367 (-)
C3H/HeJ ENSMUSGG00175054893
 protein coding gene Chr3:142702783-142713363 (-)
C57BL/6NJ ENSMUSGG00215055476
 protein coding gene Chr3:143405583-143416199 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025726
 protein coding gene Chr3:139695858-139711709 (-)
CAST/EiJ no annotation
CBA/J ENSMUSGG00210054769
 protein coding gene Chr3:143380163-143390743 (-)
DBA/2J ENSMUSGG00185057723
 protein coding gene Chr3:143970248-143980845 (-)
FVB/NJ ENSMUSGG00205054492
 protein coding gene Chr3:142245669-142256285 (-)
JF1/MsJ no annotation
LP/J ENSMUSGG00230055724
 protein coding gene Chr3:145890649-145901245 (-)
NOD/ShiLtJ ENSMUSGG00190054867
 protein coding gene Chr3:144340626-144351221 (-)
NZO/HlLtJ ENSMUSGG00225055397
 protein coding gene Chr3:148401930-148412546 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    RPF1, ribosome production factor 1 homolog
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RPF1, ribosome production factor 1 homolog
  • Synonyms
    BXDC5
  • Links
    NCBI Gene ID: 80135
    UniProt: Q9H9Y2

  • Chr Location
    1p22.3; chr1:84479257-84498352 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    15
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    598
  • Tissues
    1
  • cDNA Data
    10
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 70285 NCBI Gene Model | MGI Sequence Detail 15086 C57BL/6J ±  kb
transcript NM_027332 RefSeq | MGI Sequence Detail 1990 C57BL/6  
polypeptide Q7TND5 UniProt | EBI | MGI Sequence Detail 349 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 6
Other
Accession IDs
less
MGI:1917396
References
more
  • Summaries
    All 33
    Developmental Gene Expression 2
    Diseases 1
    Gene Ontology 6
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory