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Ctsll3 Gene Detail
Summary
  • Symbol
    Ctsll3
  • Name
    cathepsin L-like 3
  • Synonyms
    2310051M13Rik
Location &
Maps
more
  • Sequence Map
    Chr13:60946064-60950658 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 32.53 cM, cytoband B3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    252 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917452
 protein coding gene Chr13:60946064-60950663 (-)
129S1/SvImJ ENSMUSG00200015233
 protein coding gene Chr13:57859216-57863815 (-)
A/J ENSMUSG00195043787
 protein coding gene Chr13:57327189-57331791 (-)
AKR/J ENSMUSG00220039864
 protein coding gene Chr13:56848643-56853242 (-)
BALB/cJ ENSMUSG00180014191
 protein coding gene Chr13:57560046-57564645 (-)
C3H/HeJ ENSMUSG00175032523
 protein coding gene Chr13:57346140-57350739 (-)
C57BL/6NJ ENSMUSG00215031698
 protein coding gene Chr13:57353823-57358422 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018617
 protein coding gene Chr13:56174875-56179284 (-)
CAST/EiJ ENSTCUG00005035856
 protein coding gene Chr13:57758241-57762853 (-)
CBA/J ENSMUSG00210034940
 protein coding gene Chr13:57550975-57555574 (-)
DBA/2J ENSMUSG00185016200
 protein coding gene Chr13:58394045-58398644 (-)
FVB/NJ ENSMUSG00205031725
 protein coding gene Chr13:57176195-57180792 (-)
JF1/MsJ ENSUMUG00000030118
 protein coding gene Chr13:57756003-57760603 (-)
LP/J ENSMUSG00230030529
 protein coding gene Chr13:67759721-67764322 (-)
NOD/ShiLtJ ENSMUSG00190022320
 protein coding gene Chr13:57407310-57411910 (-)
NZO/HlLtJ ENSMUSG00225046300
 protein coding gene Chr13:61450100-61454699 (-)
PWK/PhJ ENSLUMG00010020561
 protein coding gene Chr13:56689443-56694044 (-)
SPRET/EiJ ENSMSPG00010037583
 protein coding gene Chr13:57124754-57129372 (-)
WSB/EiJ ENSIUOG00005024506
 protein coding gene Chr13:56882605-56887204 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 70202 NCBI Gene Model | MGI Sequence Detail 4595 C57BL/6J ±  kb
transcript NM_027344 RefSeq | MGI Sequence Detail 1332 C57BL/6  
polypeptide NP_081620 RefSeq | MGI Sequence Detail 331 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR013201 Cathepsin propeptide inhibitor domain (I29)
    IPR025661 Cysteine peptidase, asparagine active site
    IPR000169 Cysteine peptidase, cysteine active site
    IPR025660 Cysteine peptidase, histidine active site
    IPR039417 Papain-like cysteine endopeptidase
    IPR038765 Papain-like cysteine peptidase superfamily
    IPR013128 Peptidase C1A
    IPR000668 Peptidase C1A, papain C-terminal
  • GlyGen
    Q3ULP7 1 site
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 2
References
more
  • Summaries
    All 23
    Gene Ontology 3
    Phenotypes 5
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory