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Ttc9 Gene Detail
Summary
  • Symbol
    Ttc9
  • Name
    tetratricopeptide repeat domain 9
  • Synonyms
    1700029M07Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916730
    NCBI Gene: 69480
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:81678023-81714331 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 37.85 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    306 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916730
 protein coding gene Chr12:81678023-81714331 (+)
129S1/SvImJ MGP_129S1SvImJ_G0019906
 protein coding gene Chr12:82108713-82143104 (+)
A/J MGP_AJ_G0019863
 protein coding gene Chr12:79104056-79138188 (+)
AKR/J MGP_AKRJ_G0019839
 protein coding gene Chr12:81252678-81286305 (+)
BALB/cJ MGP_BALBcJ_G0019843
 protein coding gene Chr12:79331006-79364946 (+)
C3H/HeJ MGP_C3HHeJ_G0019649
 protein coding gene Chr12:81716911-81751561 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020295
 protein coding gene Chr12:84492950-84528017 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017912
 protein coding gene Chr12:76072249-76106200 (+)
CAST/EiJ MGP_CASTEiJ_G0019198
 protein coding gene Chr12:76604981-76638249 (+)
CBA/J MGP_CBAJ_G0019620
 protein coding gene Chr12:87772015-87812019 (+)
DBA/2J MGP_DBA2J_G0019735
 protein coding gene Chr12:78682710-78716303 (+)
FVB/NJ MGP_FVBNJ_G0019721
 protein coding gene Chr12:77532384-77565884 (+)
LP/J MGP_LPJ_G0019807
 protein coding gene Chr12:82023227-82059539 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019760
 protein coding gene Chr12:90767885-90803043 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020329
 protein coding gene Chr12:80782763-80817600 (+)
PWK/PhJ MGP_PWKPhJ_G0018963
 protein coding gene Chr12:73089569-73123952 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018757
 protein coding gene Chr12:75300747-75333331 (+)
WSB/EiJ MGP_WSBEiJ_G0019250
 protein coding gene Chr12:81433624-81467620 (+)



Homology
more
  • Human Ortholog
    TTC9, tetratricopeptide repeat domain 9
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TTC9, tetratricopeptide repeat domain 9
  • Synonyms
    TTC9A
  • Links
    NCBI Gene ID: 23508
    neXtProt AC: NX_Q92623
    UniProt: Q92623

  • Chr Location
    14q24.2; chr14:70641916-70675366 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with human TTC9 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 1 allele in 1 genetic background
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous KO adult females display increased body, thymus and spleen weights and improved mammary development and sensitivity to estrogen.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    760
  • Tissues
    25
  • cDNA Data
    29
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 69480 NCBI Gene Model | MGI Sequence Detail 36309 C57BL/6J ±  kb
    transcript NM_001033149 RefSeq | MGI Sequence Detail 4793 C57BL/6  
    polypeptide Q3V038 UniProt | EBI | MGI Sequence Detail 219 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 29
      cDNA 29

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGI:2144821, MGI:2144907
    References
    more
    • Summaries
      All 28
      Developmental Gene Expression 1
      Gene Ontology 1
      Phenotypes 6
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:241702 Lim LW, et al., Tetratricopeptide repeat domain 9A modulates anxiety-like behavior in female mice. Sci Rep. 2016 Nov 21;6:37568
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/16/2024
    MGI 6.23     		The Jackson Laboratory