About   Help   FAQ
H2bl1 Gene Detail
Summary
  • Symbol
    H2bl1
  • Name
    H2B.L histone variant 1
  • Synonyms
    1700024P04Rik, SubH2Bv
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916632
    NCBI Gene: 69382
  • Alliance
    genome feature page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:99120598-99121073 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 52.25 cM, cytoband D1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    92 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916632
 protein coding gene Chr13:99120593-99121073 (-)
129S1/SvImJ ENSMUSG00200007623
 protein coding gene Chr13:93693047-93693527 (-)
A/J ENSMUSG00195026718
 protein coding gene Chr13:94180108-94180588 (-)
AKR/J ENSMUSG00220025158
 protein coding gene Chr13:92670112-92670592 (-)
BALB/cJ ENSMUSG00180033270
 protein coding gene Chr13:94720203-94720683 (-)
C3H/HeJ ENSMUSG00175014532
 protein coding gene Chr13:94887049-94887529 (-)
C57BL/6NJ ENSMUSG00215023051
 protein coding gene Chr13:94771594-94772074 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018827
 protein coding gene Chr13:92639123-92639602 (-)
CAST/EiJ ENSTCUG00005010899
 protein coding gene Chr13:93994021-93994501 (-)
CBA/J ENSMUSG00210011172
 protein coding gene Chr13:94210647-94211127 (-)
DBA/2J ENSMUSG00185016588
 protein coding gene Chr13:97871435-97871915 (-)
FVB/NJ ENSMUSG00205020521
 protein coding gene Chr13:93668635-93669115 (-)
JF1/MsJ ENSUMUG00000016798
 protein coding gene Chr13:97556716-97557196 (-)
LP/J ENSMUSG00230033348
 protein coding gene Chr13:107878261-107878741 (-)
NOD/ShiLtJ ENSMUSG00190034463
 protein coding gene Chr13:94550288-94550768 (-)
NZO/HlLtJ ENSMUSG00225033460
 protein coding gene Chr13:100400170-100400650 (-)
PWK/PhJ ENSLUMG00010023044
 protein coding gene Chr13:93647727-93648207 (-)
SPRET/EiJ ENSMSPG00010008984
 protein coding gene Chr13:94933227-94933707 (-)
WSB/EiJ ENSIUOG00005032292
 protein coding gene Chr13:93551719-93552199 (-)



Homology
more
  • Human Ortholog
    H2BL1P, H2B.L histone variant 1, pseudogene
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    H2BL1P, H2B.L histone variant 1, pseudogene
  • Synonyms
    H2BP4, SubH2Bv
  • Links
    NCBI Gene ID: 115482689

  • Chr Location
    5q13.2; chr5:72733833-72734209 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    12
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    7
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 69382 NCBI Gene Model | MGI Sequence Detail 476 C57BL/6J ±  kb
    transcript NM_027064 RefSeq | MGI Sequence Detail 476 C57BL/6  
    polypeptide Q9D9Z7 UniProt | EBI | MGI Sequence Detail 123 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 7
      cDNA 7

      Microarray probesets 2
    Other
    Accession IDs
    less
    MGI:6367546
    References
    more
    • Summaries
      All 33
      Gene Ontology 6
      Phenotypes 9
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
    Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
    Send questions and comments to User Support.     		last database update
    09/01/2026
    MGI 6.24     		The Jackson Laboratory