About   Help   FAQ
Ccdc54 Gene Detail
Summary
  • Symbol
    Ccdc54
  • Name
    coiled-coil domain containing 54
  • Synonyms
    1700007N18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916589
    NCBI Gene: 69339
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:50410222-50411517 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 31.50 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    56 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916589
 protein coding gene Chr16:50410220-50411517 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022876
 protein coding gene Chr16:49513010-49514305 (-)
A/J MGP_AJ_G0022843
 protein coding gene Chr16:47344349-47345644 (-)
AKR/J MGP_AKRJ_G0022815
 protein coding gene Chr16:48921720-48923015 (-)
BALB/cJ MGP_BALBcJ_G0022843
 protein coding gene Chr16:47421639-47422934 (-)
C3H/HeJ MGP_C3HHeJ_G0022606
 protein coding gene Chr16:48978687-48979982 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023291
 protein coding gene Chr16:50777805-50779100 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020803
 protein coding gene Chr16:47398836-47400131 (-)
CAST/EiJ MGP_CASTEiJ_G0022132
 protein coding gene Chr16:49334851-49336146 (-)
CBA/J MGP_CBAJ_G0022579
 protein coding gene Chr16:52787409-52788704 (-)
DBA/2J MGP_DBA2J_G0022711
 protein coding gene Chr16:47075632-47076927 (-)
FVB/NJ MGP_FVBNJ_G0022686
 protein coding gene Chr16:46936287-46937582 (-)
LP/J MGP_LPJ_G0022778
 protein coding gene Chr16:49299343-49300638 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022704
 protein coding gene Chr16:52523090-52524385 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023306
 protein coding gene Chr16:48976234-48977529 (-)
PWK/PhJ MGP_PWKPhJ_G0021872
 protein coding gene Chr16:47424452-47425747 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021702
 protein coding gene Chr16:48809247-48810541 (-)
WSB/EiJ MGP_WSBEiJ_G0022177
 protein coding gene Chr16:48975234-48976529 (-)



Homology
more
  • Human Ortholog
    CCDC54, coiled-coil domain containing 54
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCDC54, coiled-coil domain containing 54
  • Synonyms
    NYD-SP17, SP17
  • Links
    NCBI Gene ID: 84692
    neXtProt AC: NX_Q8NEL0
    UniProt: Q8NEL0

  • Chr Location
    3q13.12; chr3:107377439-107378635 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    16
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 69339 NCBI Gene Model | MGI Sequence Detail 1296 C57BL/6J ±  kb
transcript NM_027046 RefSeq | MGI Sequence Detail 1296 C57BL/6  
polypeptide Q9DAL3 UniProt | EBI | MGI Sequence Detail 329 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 16
    cDNA 16

    Microarray probesets 4
Other
Accession IDs
less
MGI:2146467, MGI:2146678
References
more
  • Summaries
    All 19
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory