Ctrcos MGI Mouse Gene Detail - MGI:1916389 - chymotrypsin C, opposite strand

Sequence Map

Chr4:141571632-141574301 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916389	antisense lncRNA gene	Chr4:141571632-141574301 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003989	antisense lncRNA gene	Chr4:144949851-144952512 (+)
A/J	MGP_AJ_G0003970	antisense lncRNA gene	Chr4:138630603-138633268 (+)
AKR/J	MGP_AKRJ_G0003947	antisense lncRNA gene	Chr4:142659379-142662039 (+)
BALB/cJ	MGP_BALBcJ_G0003956	antisense lncRNA gene	Chr4:139317319-139319979 (+)
C3H/HeJ	MGP_C3HHeJ_G0003903	antisense lncRNA gene	Chr4:143017251-143019911 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004104	antisense lncRNA gene	Chr4:149988304-149990973 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0003866	antisense lncRNA gene	Chr4:141281290-141283984 (+)
CBA/J	MGP_CBAJ_G0003896	antisense lncRNA gene	Chr4:154414944-154417604 (+)
DBA/2J	MGP_DBA2J_G0003912	antisense lncRNA gene	Chr4:139015934-139018609 (+)
FVB/NJ	MGP_FVBNJ_G0003931	antisense lncRNA gene	Chr4:138138729-138141395 (+)
LP/J	MGP_LPJ_G0003992	antisense lncRNA gene	Chr4:144954724-144957397 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003919	antisense lncRNA gene	Chr4:158138971-158141602 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004099	antisense lncRNA gene	Chr4:143181803-143184469 (+)
PWK/PhJ	MGP_PWKPhJ_G0003820	antisense lncRNA gene	Chr4:135914474-135917325 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003766	antisense lncRNA gene	Chr4:138981721-138984434 (+)
WSB/EiJ	MGP_WSBEiJ_G0003902	antisense lncRNA gene	Chr4:143439250-143441916 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	69139	NCBI Gene Model \| MGI Sequence Detail	2670	C57BL/6J	± kb
	transcript	NR_040641	RefSeq \| MGI Sequence Detail	322	C57BL/6

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Summaries

All 11

Phenotypes 3
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8

TSS for Ctrcos:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40117	Chr4:141571611-141571621 (+)	-16 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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