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Pdzd9 Gene Detail
Summary
  • Symbol
    Pdzd9
  • Name
    PDZ domain containing 9
  • Synonyms
    4930408O21Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915233
    NCBI Gene: 67983
  • Alliance
    genome feature page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:120257954-120269566 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 64.90 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    385 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915233
 protein coding gene Chr7:120257954-120276785 (-)
129S1/SvImJ ENSMUSG00200021887
 protein coding gene Chr7:106778652-106790267 (-)
A/J ENSMUSG00195033544
 protein coding gene Chr7:111297151-111308747 (-)
AKR/J ENSMUSG00220018857
 protein coding gene Chr7:104739349-104750962 (-)
BALB/cJ ENSMUSG00180031065
 protein coding gene Chr7:107970256-107981876 (-)
C3H/HeJ ENSMUSG00175023647
 protein coding gene Chr7:108683788-108695401 (-)
C57BL/6NJ ENSMUSG00215012626
 protein coding gene Chr7:107933831-107945444 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0030397
 protein coding gene Chr7:122788165-122799489 (-)
CAST/EiJ ENSTCUG00005038443
 protein coding gene Chr7:111237624-111249164 (-)
CBA/J ENSMUSG00210024017
 protein coding gene Chr7:108406209-108417822 (-)
DBA/2J ENSMUSG00185047319
 protein coding gene Chr7:112757359-112768966 (-)
FVB/NJ ENSMUSG00205021089
 protein coding gene Chr7:108390661-108402284 (-)
JF1/MsJ ENSUMUG00000024476
 protein coding gene Chr7:117832108-117843580 (-)
LP/J ENSMUSG00230033995
 protein coding gene Chr7:118865333-118876946 (-)
NOD/ShiLtJ ENSMUSG00190018547
 protein coding gene Chr7:108610085-108621704 (-)
NZO/HlLtJ ENSMUSG00225037593
 protein coding gene Chr7:117115625-117127238 (-)
PWK/PhJ ENSLUMG00010011826
 protein coding gene Chr7:106951077-106962692 (-)
SPRET/EiJ ENSMSPG00010007516
 protein coding gene Chr7:108149687-108161266 (-)
WSB/EiJ ENSIUOG00005011905
 protein coding gene Chr7:109296525-109308178 (-)



Homology
more
  • Human Ortholog
    PDZD9, PDZ domain containing 9
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PDZD9, PDZ domain containing 9
  • Synonyms
    C16orf65
  • Links
    NCBI Gene ID: 255762
    UniProt: Q8IXQ8

  • Chr Location
    16p12.2; chr16:21957540-22001116 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    60
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000030887 Ensembl Gene Model | MGI Sequence Detail 11613 C57BL/6J ±  kb
transcript ENSMUST00000033178 Ensembl | MGI Sequence Detail 2180 Not Applicable  
polypeptide ENSMUSP00000033178 Ensembl | MGI Sequence Detail 266 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 60
    cDNA 60

    Microarray probesets 2
References
more
  • Summaries
    All 18
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory