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Lsm3 Gene Detail
Summary
  • Symbol
    Lsm3
  • Name
    LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated
  • Synonyms
    1010001J12Rik, 2610005D18Rik, 6030401D18Rik, SMX4, USS2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914928
    NCBI Gene: 67678
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:91493017-91499602 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 40.58 cM, cytoband D2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    48 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914928
 protein coding gene Chr6:91492910-91499607 (+)
129S1/SvImJ MGP_129S1SvImJ_G0031049
 protein coding gene Chr6:93115706-93122404 (+)
A/J MGP_AJ_G0031018
 protein coding gene Chr6:89568743-89575468 (+)
AKR/J MGP_AKRJ_G0030949
 protein coding gene Chr6:92056122-92062813 (+)
BALB/cJ MGP_BALBcJ_G0031029
 protein coding gene Chr6:89509617-89516310 (+)
C3H/HeJ MGP_C3HHeJ_G0030679
 protein coding gene Chr6:92380690-92387382 (-)
C57BL/6NJ MGP_C57BL6NJ_G0031488
 protein coding gene Chr6:95533611-95540305 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0030136
 protein coding gene Chr6:92166488-92175273 (+)
CBA/J MGP_CBAJ_G0030715
 protein coding gene Chr6:99086509-99093198 (+)
DBA/2J MGP_DBA2J_G0030868
 protein coding gene Chr6:88751004-88757699 (+)
FVB/NJ MGP_FVBNJ_G0030822
 protein coding gene Chr6:87960009-87966682 (+)
LP/J MGP_LPJ_G0030948
 protein coding gene Chr6:93070587-93077288 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030856
 protein coding gene Chr6:103140332-103147025 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031515
 protein coding gene Chr6:91894899-91901591 (+)
PWK/PhJ MGP_PWKPhJ_G0029852
 protein coding gene Chr6:87704273-87711066 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029681
 protein coding gene Chr6:90810699-90817269 (+)
WSB/EiJ MGP_WSBEiJ_G0030220
 protein coding gene Chr6:92368268-92374975 (+)



Homology
more
  • Human Ortholog
    LSM3, LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LSM3, LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated
  • Synonyms
    SMX4, USS2, YLR438C
  • Links
    NCBI Gene ID: 27258
    neXtProt AC: NX_P62310
    UniProt: P62310

  • Chr Location
    3p25.1; chr3:14178817-14201122 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotypes from 1 allele in 1 genetic background
    15 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
MIce homozygous for an allele that only expresses variant 1 exhibit decreased susceptibility to VSV and influenza infection.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    21
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    733
  • Tissues
    25
  • cDNA Data
    81
  • Literature Summary
    3
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 67678 NCBI Gene Model | MGI Sequence Detail 6586 C57BL/6J ±  kb
    transcript NM_026309 RefSeq | MGI Sequence Detail 631 C57BL/6  
    polypeptide P62311 UniProt | EBI | MGI Sequence Detail 102 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 84
      cDNA 83
      Primer pair 1

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:1917279, MGI:2442209
    References
    more
    • Summaries
      All 42
      Developmental Gene Expression 3
      Gene Ontology 4
      Phenotypes 15
    • Earliest
      J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
    • Latest
      J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/16/2024
    MGI 6.23     		The Jackson Laboratory