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Ankrd39 Gene Detail
Summary
  • Symbol
    Ankrd39
  • Name
    ankyrin repeat domain 39
  • Synonyms
    9130416N05Rik, C030004B10Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914816
    NCBI Gene: 109346
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:36577252-36586333 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 15.32 cM, cytoband B
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    73 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914816
 protein coding gene Chr1:36576588-36586526 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015927
 protein coding gene Chr1:35071247-35085638 (-)
A/J MGP_AJ_G0015911
 protein coding gene Chr1:34137834-34145535 (-)
AKR/J MGP_AKRJ_G0015866
 protein coding gene Chr1:34620207-34627989 (-)
BALB/cJ MGP_BALBcJ_G0015865
 protein coding gene Chr1:33826460-33835194 (-)
C3H/HeJ MGP_C3HHeJ_G0015698
 protein coding gene Chr1:34811977-34823320 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016318
 protein coding gene Chr1:36664119-36673395 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014040
 protein coding gene Chr1:31190858-31198373 (-)
CAST/EiJ MGP_CASTEiJ_G0015279
 protein coding gene Chr1:34701578-34710001 (-)
CBA/J MGP_CBAJ_G0015670
 protein coding gene Chr1:37615353-37628773 (-)
DBA/2J MGP_DBA2J_G0015771
 protein coding gene Chr1:33473266-33480927 (-)
FVB/NJ MGP_FVBNJ_G0015773
 protein coding gene Chr1:32994878-33004451 (-)
LP/J MGP_LPJ_G0015841
 protein coding gene Chr1:35441069-35453325 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015793
 protein coding gene Chr1:39843778-39854722 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016365
 protein coding gene Chr1:34651470-34662069 (-)
PWK/PhJ MGP_PWKPhJ_G0015062
 protein coding gene Chr1:33224791-33233741 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014844
 protein coding gene Chr1:34604484-34612017 (-)
WSB/EiJ MGP_WSBEiJ_G0015341
 protein coding gene Chr1:34603850-34612439 (-)



Homology
more
  • Human Ortholog
    ANKRD39, ankyrin repeat domain 39
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ANKRD39, ankyrin repeat domain 39
  • Links
    NCBI Gene ID: 51239
    neXtProt AC: NX_Q53RE8
    UniProt: Q53RE8

  • Chr Location
    2q11.2; chr2:96836611-96858016 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

Cellular Component
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    718
  • Tissues
    2
  • cDNA Data
    23
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 109346 NCBI Gene Model | MGI Sequence Detail 9082 C57BL/6J ±  kb
transcript NR_132321 RefSeq | MGI Sequence Detail 2031 C57BL/6  
polypeptide Q9D2X0 UniProt | EBI | MGI Sequence Detail 183 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 23
    cDNA 23

    Microarray probesets 5
Other
Accession IDs
less
MGI:1926103
References
more
  • Summaries
    All 26
    Developmental Gene Expression 1
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory