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Rab5if Gene Detail
Summary
  • Symbol
    Rab5if
  • Name
    RAB5 interacting factor
  • Synonyms
    1110008F13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914638
    NCBI Gene: 67388
  • Alliance
    genome feature page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:156705048-156715483 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 77.89 cM, cytoband H2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    323 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914638
 protein coding gene Chr2:156705042-156715483 (+)
129S1/SvImJ ENSMUSG00200015248
 protein coding gene Chr2:153566935-153577377 (+)
A/J ENSMUSG00195018318
 protein coding gene Chr2:153934562-153945000 (+)
AKR/J ENSMUSG00220012300
 protein coding gene Chr2:153228478-153238886 (+)
BALB/cJ ENSMUSG00180048640
 protein coding gene Chr2:153389763-153400196 (+)
C3H/HeJ ENSMUSG00175045698
 protein coding gene Chr2:154140065-154150500 (+)
C57BL/6NJ ENSMUSG00215024822
 protein coding gene Chr2:153554291-153564726 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024564
 protein coding gene Chr2:148809736-148819976 (+)
CAST/EiJ ENSTCUG00005042872
 protein coding gene Chr2:152526690-152537231 (+)
CBA/J ENSMUSG00210015992
 protein coding gene Chr2:154071198-154081635 (+)
DBA/2J ENSMUSG00185047887
 protein coding gene Chr2:153770482-153780889 (+)
FVB/NJ ENSMUSG00205022876
 protein coding gene Chr2:152830902-152841339 (+)
JF1/MsJ ENSUMUG00000017241
 protein coding gene Chr2:153426712-153437119 (+)
LP/J ENSMUSG00230042179
 protein coding gene Chr2:155364685-155375127 (+)
NOD/ShiLtJ ENSMUSG00190036517
 protein coding gene Chr2:153459640-153470075 (+)
NZO/HlLtJ ENSMUSG00225051718
 protein coding gene Chr2:163386529-163396968 (+)
PWK/PhJ ENSLUMG00010039722
 protein coding gene Chr2:153360065-153370561 (+)
SPRET/EiJ ENSMSPG00010034883
 protein coding gene Chr2:156145414-156155741 (+)
WSB/EiJ ENSIUOG00005043447
 protein coding gene Chr2:153150047-153160482 (+)



Homology
more
  • Human Ortholog
    RAB5IF, RAB5 interacting factor
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RAB5IF, RAB5 interacting factor
  • Synonyms
    C20orf24, CFSMR2, OPTI, PNAS-11, RCAF1, RIP5
  • Links
    NCBI Gene ID: 55969
    UniProt: Q9BUV8

  • Chr Location
    20q11.23; chr20:36605779-36612557 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with human RAB5IF associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    28
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    635
  • Tissues
    7
  • cDNA Data
    8
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000027637 Ensembl Gene Model | MGI Sequence Detail 10436 C57BL/6J ±  kb
transcript ENSMUST00000029165 Ensembl | MGI Sequence Detail 1045 Not Applicable  
polypeptide ENSMUSP00000029165 Ensembl | MGI Sequence Detail 129 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 4
Other
Accession IDs
less
MGI:2138894, MGI:6156117
References
more
  • Summaries
    All 34
    Developmental Gene Expression 1
    Gene Ontology 8
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:282679 Moutaoufik MT, et al., Rewiring of the Human Mitochondrial Interactome during Neuronal Reprogramming Reveals Regulators of the Respirasome and Neurogenesis. iScience. 2019 Sep 27;19:1114-1132
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory