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Zc2hc1a Gene Detail
Summary
  • Symbol
    Zc2hc1a
  • Name
    zinc finger, C2HC-type containing 1A
  • Synonyms
    3110050N22Rik, Fam164a
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914556
    NCBI Gene: 67306
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:7568543-7618896 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 2.01 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    776 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914556
 protein coding gene Chr3:7568475-7618908 (+)
129S1/SvImJ MGP_129S1SvImJ_G0027050
 protein coding gene Chr3:4328022-4380722 (+)
A/J MGP_AJ_G0027014
 protein coding gene Chr3:4604962-4653774 (+)
AKR/J MGP_AKRJ_G0026984
 protein coding gene Chr3:4410814-4457524 (+)
BALB/cJ MGP_BALBcJ_G0027023
 protein coding gene Chr3:4317115-4371602 (+)
C3H/HeJ MGP_C3HHeJ_G0026763
 protein coding gene Chr3:4701313-4751387 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027467
 protein coding gene Chr3:4870593-4928230 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024829
 protein coding gene Chr3:3670083-3721768 (+)
CAST/EiJ MGP_CASTEiJ_G0026221
 protein coding gene Chr3:4692980-4740970 (+)
CBA/J MGP_CBAJ_G0026741
 protein coding gene Chr3:4675264-4737849 (+)
DBA/2J MGP_DBA2J_G0026877
 protein coding gene Chr3:4204631-4253102 (+)
FVB/NJ MGP_FVBNJ_G0026844
 protein coding gene Chr3:4061589-4112772 (+)
LP/J MGP_LPJ_G0026987
 protein coding gene Chr3:4821304-4881959 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026864
 protein coding gene Chr3:5723443-5776094 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027527
 protein coding gene Chr3:4268920-4318067 (+)
PWK/PhJ MGP_PWKPhJ_G0025956
 protein coding gene Chr3:4373049-4427180 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025759
 protein coding gene Chr3:4393926-4446362 (+)
WSB/EiJ MGP_WSBEiJ_G0026292
 protein coding gene Chr3:4281264-4329988 (+)



Homology
more
  • Human Ortholog
    ZC2HC1A, zinc finger C2HC-type containing 1A
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ZC2HC1A, zinc finger C2HC-type containing 1A
  • Synonyms
    C8orf70, CGI-62, FAM164A
  • Links
    NCBI Gene ID: 51101
    neXtProt AC: NX_Q96GY0
    UniProt: Q96GY0

  • Chr Location
    8q21.13; chr8:78666050-78719765 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotypes from 1 allele in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    872
  • Tissues
    28
  • cDNA Data
    58
  • Literature Summary
    4
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000043542 Ensembl Gene Model | MGI Sequence Detail 50354 C57BL/6J ±  kb
    transcript ENSMUST00000051064 Ensembl | MGI Sequence Detail 3292 Not Applicable  
    polypeptide ENSMUSP00000054734 Ensembl | MGI Sequence Detail 324 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      1 Sequence
    • Protein Ontology
      PR:000030562 zinc finger C2HC domain-containing protein 1A
      (term hierarchy)
    • InterPro Domains
      IPR026319 Zinc finger C2HC domain-containing protein 1A/B-like
    Molecular
    Reagents
    less
    • All nucleic 59
      cDNA 58
      Primer pair 1

      Microarray probesets 6
    Other
    Accession IDs
    less
    MGI:2139797, MGI:2139899
    References
    more
    • Summaries
      All 35
      Developmental Gene Expression 4
      Gene Ontology 1
      Phenotypes 7
    • Earliest
      J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
    • Latest
      J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/09/2024
    MGI 6.23     		The Jackson Laboratory