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Carlr Gene Detail
Summary
  • Symbol
    Carlr
  • Name
    cardiac and apoptosis-related long non-coding RNA
  • Synonyms
    4933439G12Rik, Carl
Location &
Maps
more
  • Sequence Map
    Chr2:18804056-18806629 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    43 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914024
 lncRNA gene Chr2:18804056-18806629 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005872
 lincRNA gene Chr2:16522618-16525191 (-)
A/J MGP_AJ_G0005864
 lincRNA gene Chr2:15856281-15858858 (-)
AKR/J MGP_AKRJ_G0005839
 lincRNA gene Chr2:16387633-16390210 (-)
BALB/cJ MGP_BALBcJ_G0005843
 lincRNA gene Chr2:15882542-15885115 (-)
C3H/HeJ MGP_C3HHeJ_G0005790
 lincRNA gene Chr2:16304008-16306581 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006003
 lincRNA gene Chr2:16946740-16949313 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0005339
 lincRNA gene Chr2:15239126-15241704 (-)
CAST/EiJ MGP_CASTEiJ_G0005727
 lincRNA gene Chr2:16270692-16273269 (-)
CBA/J MGP_CBAJ_G0005775
 lincRNA gene Chr2:17708378-17710951 (-)
DBA/2J MGP_DBA2J_G0005796
 lincRNA gene Chr2:15779034-15781611 (-)
FVB/NJ MGP_FVBNJ_G0005822
 lincRNA gene Chr2:15575344-15577917 (-)
LP/J MGP_LPJ_G0005876
 lincRNA gene Chr2:16361446-16364019 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0005809
 lincRNA gene Chr2:17660712-17663294 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006000
 lincRNA gene Chr2:16336393-16338966 (-)
PWK/PhJ MGP_PWKPhJ_G0005676
 lincRNA gene Chr2:15659048-15661626 (-)
SPRET/EiJ MGP_SPRETEiJ_G0005588
 lincRNA gene Chr2:16460564-16463141 (-)
WSB/EiJ MGP_WSBEiJ_G0005780
 lincRNA gene Chr2:16397464-16400037 (-)



Homology
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Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    7
Sequences &
Gene Models
less
  • All Sequences
    29
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 66774 NCBI Gene Model | MGI Sequence Detail 2574 C57BL/6J ±  kb
transcript NR_131254 RefSeq | MGI Sequence Detail 2581 ZRU/MplStud  
polypeptide A0A668KLV5 UniProt | EBI | MGI Sequence Detail 40 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 2
References
more
  • Summaries
    All 13
    Gene Ontology 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:207521 Wang K, et al., CARL lncRNA inhibits anoxia-induced mitochondrial fission and apoptosis in cardiomyocytes by impairing miR-539-dependent PHB2 downregulation. Nat Commun. 2014;5:3596
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory